Gene Shew_2163 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2163 
Symbol 
ID4923338 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand+ 
Start bp2513415 
End bp2514017 
Gene Length603 bp 
Protein Length200 aa 
Translation table11 
GC content57% 
IMG OID640163748 
Producthypothetical protein 
Protein accessionYP_001094288 
Protein GI127513091 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.277214 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.915141 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTCTCA GCCAACTGCC CTTTTCACAA TCCTGCGAAA ACAACAAGGC GCCTATTCTA 
GCGGTACTGC AACAGAGCTT TAGGACCACA CGGCAGGTAT TAGAGATAGG TAGCGGCACA 
GGCCAGCATG CGGTGTTCTT TGCGGCTCAC CTGCCCCATC TCACTTGGTG CCCCAGCGAT 
CAGCCGCGAT TTATCGCGCC GCTCGAGAAG CGAATCGCCC TGCAGGGCGG CGATAACATC 
GCGCCGCCCG TTAGCCTGGA TGTCACCGCC CCCTGGCCCC TGGCCCAGGG AGAGGTTGAC 
GGCATCTTCA GCGCCAACAC GCTGCACATC ATGAGCGAGG CCATGGTGAC TGATTTCTTC 
AGGGGTGTTG ATCGCCACCT CAGCGAGACT GGCAGCCTCT GCGTCTACGG CCCCTTCAAC 
TACAATAACC AATACACCAG CGACAGCAAT CGCCAGTTCG ATATCTGGCT CAAGCATCGC 
AACATCCACA GTGGCATCCG CGACATAGAA TGGATAATGG ATCTAGCCAA CACGGCTGGC 
CTAAGCCTAG AGGCCGACCA CGCCATGCCC GCCAATAATC GGCTGCTGCA TTTTTCACGT 
TAA
 
Protein sequence
MSLSQLPFSQ SCENNKAPIL AVLQQSFRTT RQVLEIGSGT GQHAVFFAAH LPHLTWCPSD 
QPRFIAPLEK RIALQGGDNI APPVSLDVTA PWPLAQGEVD GIFSANTLHI MSEAMVTDFF 
RGVDRHLSET GSLCVYGPFN YNNQYTSDSN RQFDIWLKHR NIHSGIRDIE WIMDLANTAG 
LSLEADHAMP ANNRLLHFSR