| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2162 |
|---|
| Symbol | cpdB |
|---|
| ID | 4923337 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2511207 |
|---|
| End bp | 2513291 |
|---|
| Gene Length | 2085 bp |
|---|
| Protein Length | 694 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640163747 |
|---|
| Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
|---|
| Protein accession | YP_001094287 |
|---|
| Protein GI | 127513090 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
|---|
| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00580224 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATATGT TTAATAAAAA ACTATTAGCC GTGGTTATCG CATCGAGTAT CGGACTCACC
GCCTGTAGCT GGAACGACGA TGATGAGGAT ACGATCACCT CGGCAAACGT GGAGCTCAGG
GTACTGGAAA CCACAGATCT GCACACTAAT ATCATGGACT ATGACTACTA CCAGTCTAAG
GTCGATCCCA CCATAGGCCT GGCGCGCACC GCCAGCCTGA TCCACGCCGC CCGTAAAGAG
GCAACTAACT TCGTGCTAGT GGATAACGGT GACCTGCTTC AGGGCAGCCC CATGGGCGAC
TACATGGCCA AGATCGGCCT CAAGGAAGGG GATGTCCATC CAGCCTACAA GGCGATGAAC
ACCTTAGACT ATGAGGTGGC CAACATAGGC AACCACGAGT TTAACTATGG CCTGGATTTT
CTTGAGAAGG CCCTCAGCGG CGCCGAGTTC CCCTATATCA ACGCCAACGT CTACTGCGCG
GCCGATGACT GCTGGAATGA CATCAAGAAA GGCGACAACC TGTTTACCCC TTACCTGATC
AAGGAAAAAG TGGTTATCGA CACCCAGGGC CGTGAACACA CCATCAAGAT AGGTTACATT
GGCTTCGTGC CGCCACAGAT CATGTTGTGG GACAAGCAGC ATCTGACCGG TAAGGTCGAA
GCTAAAGATA TCATAGAGAC CGCCAAGCTG TTCGTGCCTA AGATGAAGGC CGAGGGCGCC
GATGTGATCA TCGCCATCCC CCACTCTGGC ATTGGCTCAA CGGAAAACCC AGGCGATGCC
ATGGCTGAGA ACGCCACCTT CGCCCTCACC AATGTCGAAG GCATCGATGC CATCATGTTC
GGCCATAGCC ACTCTATCTT CCCACACGCC AACTATGCCG ATCTGCCCAA TACCGATGTG
GAGAAGGGTC TGCTCAACGG TGTAGCCGCC GTCATGCCGG GCCGCTGGGG CGACAACTTA
GGGGTGGTGG ATCTTAAACT GACCCTCAAA GATGGCGCCT GGTCGGTAAC CGATGCCCAA
ACCGAGGCGC GTCCTATCTA TGATGGCGCC AACAAGGTTG CCCTGGTGGA CGCCGACAAG
GATATTCACG ATGCGGTCGA GCTCGAGCAT CAAGGCACCC TGGCCTTCGT GGATCAGCCC
ATAGGTGTCG CCGCGGCGGA CATGTATAGC TTCCTGACGC TGGTACAGGA TGATCCTACG
GTACAAATCG TCTCGGATGC ACAGATTGCC CAGGTGAGCG CCAAGCTACC CGAATCGCTG
CAGGGGATCC CAGTCCTCTC GGCAGCGGCC CCCTTCAAGG CGGGTGGGCG TCACGCCACC
GAGGCCGATG CCTCTCAGTT CGTGCAGGTG GATGCCGGCG ATCTGACCTT TAAGAACGCC
GCCGATCTCT ACCTATACCC TAATACCATG GTGGCGGTGA AGATCACAGG CGTCGAGCTG
AAAGACTGGT TAGAGTGTAG TGCCAACCAG TTTAACCAGA TCAACCCTAA CTCAAGCGAG
CCTCAGTCGC TGATCAACTG GAATGGCCAT CCGACTTACA ACTTCGATGT GATCGACGGC
GTGACCTATA AGATAGATGT CACTCAGCCT AGCAAGTTTG ACCGTGACTG CGCCGTTATT
GCTGGCAACG AGAACGCCCA GCGTATAGTC GATCTGGCCT ACACCACGCC AACAGGCGAG
GTGTTAACCG GTGATGCGCT AAGCGCCCAG GAGTTTATCG TCGCCTCTAA CAACTACCGC
GCCTTCGGCG GCAAGTTTGC CGGTACGGGC TCAGAGTATG TGGTGATGGA GCTACCAGAC
ACTAACCGTG AGGCCCTAGC CGCCTATATC ACAGCGCAAT CCAAGCCGAA CGATCAAGGT
GGTTATGATG GCATGGTCGA CCCAAGAGCC GACTACAACT GGGACTTCAA GACCATCAAC
ACTCAGGTGG CGCTAGACAT CCGCTTTGAG ACTCAGAACA GCGACAAGGC CGACAAGTTC
ATCAGCGACA ACCAGCTGCG TAAGATGGAA AAGCTGGCCG AGCCAGATGC CCTTGGCTTT
GCCATCTACC GCATCGATCT GACCAGCGAT CCCGTCGCGA AATGA
|
|---|
| Protein sequence | MDMFNKKLLA VVIASSIGLT ACSWNDDDED TITSANVELR VLETTDLHTN IMDYDYYQSK
VDPTIGLART ASLIHAARKE ATNFVLVDNG DLLQGSPMGD YMAKIGLKEG DVHPAYKAMN
TLDYEVANIG NHEFNYGLDF LEKALSGAEF PYINANVYCA ADDCWNDIKK GDNLFTPYLI
KEKVVIDTQG REHTIKIGYI GFVPPQIMLW DKQHLTGKVE AKDIIETAKL FVPKMKAEGA
DVIIAIPHSG IGSTENPGDA MAENATFALT NVEGIDAIMF GHSHSIFPHA NYADLPNTDV
EKGLLNGVAA VMPGRWGDNL GVVDLKLTLK DGAWSVTDAQ TEARPIYDGA NKVALVDADK
DIHDAVELEH QGTLAFVDQP IGVAAADMYS FLTLVQDDPT VQIVSDAQIA QVSAKLPESL
QGIPVLSAAA PFKAGGRHAT EADASQFVQV DAGDLTFKNA ADLYLYPNTM VAVKITGVEL
KDWLECSANQ FNQINPNSSE PQSLINWNGH PTYNFDVIDG VTYKIDVTQP SKFDRDCAVI
AGNENAQRIV DLAYTTPTGE VLTGDALSAQ EFIVASNNYR AFGGKFAGTG SEYVVMELPD
TNREALAAYI TAQSKPNDQG GYDGMVDPRA DYNWDFKTIN TQVALDIRFE TQNSDKADKF
ISDNQLRKME KLAEPDALGF AIYRIDLTSD PVAK
|
|---|
| |