| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2131 |
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| Symbol | |
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| ID | 4923497 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2476060 |
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| End bp | 2478048 |
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| Gene Length | 1989 bp |
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| Protein Length | 662 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640163716 |
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| Product | exodeoxyribonuclease V, alpha subunit |
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| Protein accession | YP_001094256 |
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| Protein GI | 127513059 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR01447] exodeoxyribonuclease V, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCAGC TAGCACAGCC ACTTAGCCAG CTGCTTAAGC ACTGGCAGCA GGAGGGACTG
CTGACCCCAT TGGATCGCCA CTTTGCCCTG CAGATGCAAG CCCTGCACAG CGATGGCGAC
GATCTCTTTA CCTTGATCTG CGCCCTGCTC AGCCGTCAAC TATCCCAGCA ACACACCTGT
CTGCCCCTGA CGCAGATAGA CAAGAATAAC CCGCTGCATG AACAGCAGCC CCAATGTCAA
CTTGAGCTGA CCCCACAGGC GCTGGCCGGG CAGTTGACGC AATATCAAGC CATTAGTCCG
GCCGATGGTG AGCTAAACAC CCCCTTGATC CTCGATGGCG ACAGGCTCTA CCTGCAGCGT
TACTACCAGT TTGAGACTCA GGTGGCCGAG CGTCTCACGC GCCTCAATCA GCCCATCACA
GTTGCGGCGC CAGATAAGGT AGCCTGCATA CTGAATATTC TGTTTGCCGG TCAGGCCGAG
AAGCCCGATT GGCAGAAGGT AGCCACCGCC ACCGCCTTTA GCCAGAAGCT GGCGGTGATC
ACCGGCGGGC CCGGTACGGG CAAGACCACC ACAGTAACTA AGCTGTTACT GCTGCTCTGT
CTGGAGCAGC AACTCACCAT CAAGTTGGTG GCGCCAACGG GCAAGGCGGC CGCGCGCCTG
AGCGAGTCGA TCAAGGCCTC CAAGGCGAGG CTTGCCCAGG AGCTGGCGCC CTATGGCGAT
GAGTTAGATC TTGAGCAGCT TAAGCAGGTG CCAGAAGAGG CAGCCACCCT GCACCGGCTA
CTGGGGGTGA TCCCCGGCTC CCACAGATTC AGGCACCACA AGGACAATCC TCTCAGGCTG
GATCTCTTGA TCCTCGATGA GGCCTCCATG GTGGATCTGC CCATGATGCA CAAGCTGCTG
GAAGCGCTGC CGGAGCACAC CAGGCTTATT CTGCTTGGCG ATCAGGACCA GCTCGCCTCG
GTCGAGGCCG GCGCCGTGCT GGCTGATATC TGCGCCGGGC TAAAACAGAC AAGCTCACAG
GAAAGTGGCT GGCGCATGCG CTACTCACAA GAGAAGGCAG CACTCCTGAG TCAACTGACC
AATGAAGATC TCAGCAACTA TATCGATGCG CGCCCGGCAC TGGGCGATAG TCTGGCCATG
CTGATGCACA GCCACAGATT TAAGGGCGAT GCCGGTATCG GACAACTAGC TGGCGCCGTC
AACCGCCGCG ATCTGACGGG CATATTAAGT GTCTGGCAGA AAGGATACGA CGAACTTAGC
TGGCTTGAGC ATCAACTCTC GCCCCAGGGC AACGCCGGAC TCAAGGCCTT GATGGCACAG
AGCGTCGACA AATATCGCCC TTATCTTGAC TTGGTTGGTC ACCTGGCCAA CAAAGAGCAG
GCTCAAGAAG TAGATAAAGA GGCAGATCAA CAACTGGATC TGGACGAAAT CGCCAACCAG
ATCATCACTC GCTTCAACAA CTTCCGTATC CTCTGCGCCA TGCGCGCCGG CGAATATGGC
GTCGAGGGGA TCAATGCGGC GGTCACCCAG GCACTGAAGG ATGCCCAGCT GATCCAGCCA
TCCAGCGAAT TTTACGCCGG ACGCCCTATC ATCATTCAGA GTAACGACTA TAACCTAGGG
CTGTTTAACG GTGATATCGG GGTTATCCTG CCAGGTCATG GCCCCACCCA CCGCCTGATG
GCCTATTTCG TTCAGGCCGA TGGCAGCCTG CTCAAGGTAC TGCCCGCTCG CCTGCCCAGC
CACGAGACCT GTTATGCCAT GACGGTACAT AAGAGCCAGG GCAGTGAGTT TCAGCAGGTC
GCCTTCGTCT TGCCGCCAAG GCCCAGCGTT GCCCAGCGCC AGCTACTGAC CAAGGAGCTG
GTCTACACCG CCATCACCCG CGCCAAGGGA CACTTTAGCT GTCTTGGCAG CCAGGCGGTG
TTCGAAGCGG CATGCAGTCA GGTAACCCTT AGGGCCTCTG GCCTAGCACA GAGGTTGTGG
CCAGCATGA
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| Protein sequence | MIQLAQPLSQ LLKHWQQEGL LTPLDRHFAL QMQALHSDGD DLFTLICALL SRQLSQQHTC
LPLTQIDKNN PLHEQQPQCQ LELTPQALAG QLTQYQAISP ADGELNTPLI LDGDRLYLQR
YYQFETQVAE RLTRLNQPIT VAAPDKVACI LNILFAGQAE KPDWQKVATA TAFSQKLAVI
TGGPGTGKTT TVTKLLLLLC LEQQLTIKLV APTGKAAARL SESIKASKAR LAQELAPYGD
ELDLEQLKQV PEEAATLHRL LGVIPGSHRF RHHKDNPLRL DLLILDEASM VDLPMMHKLL
EALPEHTRLI LLGDQDQLAS VEAGAVLADI CAGLKQTSSQ ESGWRMRYSQ EKAALLSQLT
NEDLSNYIDA RPALGDSLAM LMHSHRFKGD AGIGQLAGAV NRRDLTGILS VWQKGYDELS
WLEHQLSPQG NAGLKALMAQ SVDKYRPYLD LVGHLANKEQ AQEVDKEADQ QLDLDEIANQ
IITRFNNFRI LCAMRAGEYG VEGINAAVTQ ALKDAQLIQP SSEFYAGRPI IIQSNDYNLG
LFNGDIGVIL PGHGPTHRLM AYFVQADGSL LKVLPARLPS HETCYAMTVH KSQGSEFQQV
AFVLPPRPSV AQRQLLTKEL VYTAITRAKG HFSCLGSQAV FEAACSQVTL RASGLAQRLW
PA
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