Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2129 |
Symbol | |
ID | 4923495 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2468812 |
End bp | 2472390 |
Gene Length | 3579 bp |
Protein Length | 1192 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640163714 |
Product | exodeoxyribonuclease V, gamma subunit |
Protein accession | YP_001094254 |
Protein GI | 127513057 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1330] Exonuclease V gamma subunit |
TIGRFAM ID | [TIGR01450] exodeoxyribonuclease V, gamma subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGTATT TGGTGCAATC GAATCGAATG GAAGCTTTGG CAGAGCTGCT CGCCAACGAG CTACAGACGC CCCTGCCGGG TCAGTCGCCG CTGAGCAATG AGCAGATCTT GGTCCAAAGC CCCGGCATGT CCACCTGGCT CAGGCTCGCC ATCGCCAAGC AAAATCAGGT CGCGGCGGCG CTGGAGTTCC CCCTGCCGTC GAGTTTTATC TGGCAACTCT GCCACCAGCT GCTGCCGGAT GTTCCCAAGG AGAACGCCTT TACCAAACCT GCCATGACCT GGAAGCTGAT GGAGCTGCTG CCAGGCCTCT TGTCTCAGGA GGTGTTCGCC CCCCTGGCAA ACTATCTGAA AGACGATGCC ATACTCACAG ACAGCGCGGC GCCGCACTCG TTAAAACTGT TTCAGCTTTG CAGCCAGATA GCCGACATCT TCGACCAATA CCTGGTCTAT CGCCCCGACT GGATCTTGGC CTGGGAACAG GGTGAGGATC GACTGCCCCC CAAGGAGCGT CCGCTAGATG CCAACCAGCA GTGGCAAAGC CTGCTCTGGC GCGAACTTAT TCACTACAAT CATCACACGC TGAACCAGAG CCGCTATCAC AGGGCGAACC TGCACCAGGC GCTATTTGAT GCCTTAAGCG ATCCCCTGTG CGATCTTAGC AAGTTGCCGC CGCGCCTGTT TGTCTTTGGT ATCTCCTCCA TGGCGCCGCA GACCCTGGAA GTACTCTACT TTTTGGCCAA GCGGATCGAT GTAGTGATGC TCAACCTAAG CCCCTGCCAA CACTATTGGG GCGACATAGT TGATCCTAAG CTCAGGGCGC GAATGGCGCT GCAATATGGC GACAAGCAGC AACTCGCCAT CGATTGGGAG AGTAAGCTCG AGGTGGGCAA TCCCCTGCTG GCCAACAACG GTAAGATGGG CCGCGAGCTG TTAGACCTTA TCCTGGAGTT GCCGGAAAAC GACACCAACT TCAACTTCGA GTGCTATCAA GATCCGGGCT CAAACAGCCT GCTCCACGGT GTGCAGCAAG ATATCCTAGA GCTTTGCACC CGCGGCGAAA CCCTAGGACC GGACGCCGAA CTCTATCTCA CCACTAAAGG CAGACGAGTA CTTAAGATTG ACGATGATTC CCTGACCCTC AGGAGCTGTC ATAGCCCGCT GCGGGAGCTT GAGACACTGC ACGATCATCT GCTGGAGCAG TTGTCGCAAT CGGATGGTCT CGCCCCCAAA GATATCGTGG TGATGATGCC GGATGTAGCG GCCTACGCGC CCTACATAGA TGCGGTATTT GCCTCCAAGC GCGGCGATCA TTTTATCCCT TACGCCATTG CCGATCGCGG CGCGGCCCAG GAATCCCCGC TGATCAACAG CTTCCTGCAC CTGCTGGGCC TTAACAAGAG CCGCTTTGCC CTAACGGACA TCTTAGGCAT ACTCGAGGTG CCCGCCGTGA TGCGCCGTTT CGATCTGGAC GATGATGACC TCCTGCTCAT CCGCCGCTGG CTGGAGCAGG CGGGCGTGCG CTGGGGAAGG GATCAGCACA GCCGTCAGGC GCAGCAGCTG CCCGCCTTCG AACACAACTC CTGGGCCTTT GGCATCAAGC GGCTGATCTT AGGCTATAGC TTCAGCGATG AGGCACCTAT CTACCATGAC AGCCTGGCGC TCCCCGGCGT CGAAGGGCAA TCGGCCCAGG CACTGGGTAA GCTGCTTAAC TTTATCGAGG CAATCGACGA GTTTAATCTG GCGCTGGGCG AGCATTGCCC CTTAAGCGTG CGCATTACTC AGCTGCAGAC CCTGGTAGAG ACCTTCTACG ACTGTGTCGA TGAGGAGCTG AGTCAGAAAC AGGAGCTTTT ACAGGCAATC ACCCGTCTGA GTGAGGAGCT CACTGCTACA CAGTATCAGA GCGAACTCGA ACTCGAGGTG ATGCAGAACT GGTTTACCCG TCACCTCACC GAGTCCCGGG TGGGACAGCG TTACCTAGCC GGTAGCGTCA ACTTCTGTAC CCTGATGCCG ATGCGCTCCA TCCCCTTTAT GCTGGTCTGT CTGCTAGGGA TGAACGATGG GGTTTACCCC AGGGTACAGC ACCCGGTCGG CTTCGATCTG GTAGCGCAGG AAGGGCCACG TAAGGGCGAC CGTTCTCGCA GGTTGGATGA CAGATACCTG TTCCTCGAGG CGCTGCTCTC AGCCAGAGAG CAGCTCTACA TCAGCTATAT CGGCCATAGC GAGCGGGATA ACAGCGAGCG CATCCCCTCG ATGCTGGTGT CCGAGCTTAT CGAATACTGC CAGCTCTGCT ATTTGCCGGA AAATTGCGCC CACCTGCTTA AGGGGTCTAA TGCAGATGAC ACAAGCACAG CAGATATTGC CAAAATCGAG CTGGCCATCT TAGACCAGCT GATCATCACC ATGCCGCTGC AGCCCTTCGA TGAACGCCTC TATCTGGCAG ACGAGTCTGA AGGCGCAGAG TGTGAAGGCG CAAAGAGTGA GCCAAGACGT CTTCGCCAGA GCTATAGCGA GCAGTGGTGT CCCCGAGCCC TTACTGAGCA GGATAAGCAG CACGACGGGG AGCAGGGTGC CAAGCCAGCA AGTGCTGGTC ATTTCATCGA GGCGCCGCTG AGTCTGGTCG CCGATGAAGA TAAGGGCGAG CCGCTTGAGC TCTCGGCGCT GATCCGTTTC TACCGCAATC CGGCGCAGTA TTTCTTCAAT CGCACCCTCA AGCTGGATCT TAATCTCAGC ATACAGGCGG ATGAAAATGA TGAGCCCTTC GCCCTCAATC CCCTGTCTCG CTATCAGCTG CAATCGACCC TGATAGAAGA TGCGGTCAAA TCGGGCGATG AGCGGCCATC GAGTGAGTTG CTAGAGCGCT TGCGGCTCTC GGGTCAGTTG CCACTAGCCC CCTTTGATGA CCTCCTGCTG AAACAGTATC AGCACGATAT TCGCGCCCTG GTCGGTCGCA CCCTCTATCT GCAGGGAGAG AGCAGCCATA CCCAGGATAT CGACCTACTG TTGAGCGATA GCGCCGCAAC TGCTCTGGTT GGGCGAATCG ACGGCGTCAG CGCCAAGGGG CTGGTCAACT ACCGTCCGGG AACGGCGAAC GCACGGGATC TGATCCGTGT CTATCTGCGT CACCTGTGTC TTAACGCCAG CGTCAGTGAC AATAGCGACG TGGAACGCCA TGAGGCAACG CCTTGGCAGC GCCACAGCTA TCTGCTCGAT ATCGGCCATT TCCACGCCTT CGCGCCGATA ACGCCTGAGC AGGCGCTCAA TCAGCTCTCG CTCTGGGCCG AGCATTATCA TCAGGGGCAG AGCCAGCCCT TGCCCTTCAT GCCAAGAACC GCCTTTGCCT ACGTAGAGGC CGAGGGTGAA CATATTGAGA AGCTGATCGC CGCCCAGCCC CAATGGCTGG ATGAACAATC TAATCTGGGC GAAGGCCAGG AGGCTCACTA TCAGCGGCTG TTTACTTTCC CCGATGACTT TAGCGAGGCA GGCTTTGGCA CCATAGCCAG CACGCTGCTC TCACCTATGC TGAGTCTTTA TCACAAGGCG CCGCTGAGCG AGTTGGCCGA TTTCGTGGAG GGCCAATAA
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Protein sequence | MLYLVQSNRM EALAELLANE LQTPLPGQSP LSNEQILVQS PGMSTWLRLA IAKQNQVAAA LEFPLPSSFI WQLCHQLLPD VPKENAFTKP AMTWKLMELL PGLLSQEVFA PLANYLKDDA ILTDSAAPHS LKLFQLCSQI ADIFDQYLVY RPDWILAWEQ GEDRLPPKER PLDANQQWQS LLWRELIHYN HHTLNQSRYH RANLHQALFD ALSDPLCDLS KLPPRLFVFG ISSMAPQTLE VLYFLAKRID VVMLNLSPCQ HYWGDIVDPK LRARMALQYG DKQQLAIDWE SKLEVGNPLL ANNGKMGREL LDLILELPEN DTNFNFECYQ DPGSNSLLHG VQQDILELCT RGETLGPDAE LYLTTKGRRV LKIDDDSLTL RSCHSPLREL ETLHDHLLEQ LSQSDGLAPK DIVVMMPDVA AYAPYIDAVF ASKRGDHFIP YAIADRGAAQ ESPLINSFLH LLGLNKSRFA LTDILGILEV PAVMRRFDLD DDDLLLIRRW LEQAGVRWGR DQHSRQAQQL PAFEHNSWAF GIKRLILGYS FSDEAPIYHD SLALPGVEGQ SAQALGKLLN FIEAIDEFNL ALGEHCPLSV RITQLQTLVE TFYDCVDEEL SQKQELLQAI TRLSEELTAT QYQSELELEV MQNWFTRHLT ESRVGQRYLA GSVNFCTLMP MRSIPFMLVC LLGMNDGVYP RVQHPVGFDL VAQEGPRKGD RSRRLDDRYL FLEALLSARE QLYISYIGHS ERDNSERIPS MLVSELIEYC QLCYLPENCA HLLKGSNADD TSTADIAKIE LAILDQLIIT MPLQPFDERL YLADESEGAE CEGAKSEPRR LRQSYSEQWC PRALTEQDKQ HDGEQGAKPA SAGHFIEAPL SLVADEDKGE PLELSALIRF YRNPAQYFFN RTLKLDLNLS IQADENDEPF ALNPLSRYQL QSTLIEDAVK SGDERPSSEL LERLRLSGQL PLAPFDDLLL KQYQHDIRAL VGRTLYLQGE SSHTQDIDLL LSDSAATALV GRIDGVSAKG LVNYRPGTAN ARDLIRVYLR HLCLNASVSD NSDVERHEAT PWQRHSYLLD IGHFHAFAPI TPEQALNQLS LWAEHYHQGQ SQPLPFMPRT AFAYVEAEGE HIEKLIAAQP QWLDEQSNLG EGQEAHYQRL FTFPDDFSEA GFGTIASTLL SPMLSLYHKA PLSELADFVE GQ
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