Gene Shew_2129 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2129 
Symbol 
ID4923495 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2468812 
End bp2472390 
Gene Length3579 bp 
Protein Length1192 aa 
Translation table11 
GC content57% 
IMG OID640163714 
Productexodeoxyribonuclease V, gamma subunit 
Protein accessionYP_001094254 
Protein GI127513057 
COG category[L] Replication, recombination and repair 
COG ID[COG1330] Exonuclease V gamma subunit 
TIGRFAM ID[TIGR01450] exodeoxyribonuclease V, gamma subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGTATT TGGTGCAATC GAATCGAATG GAAGCTTTGG CAGAGCTGCT CGCCAACGAG 
CTACAGACGC CCCTGCCGGG TCAGTCGCCG CTGAGCAATG AGCAGATCTT GGTCCAAAGC
CCCGGCATGT CCACCTGGCT CAGGCTCGCC ATCGCCAAGC AAAATCAGGT CGCGGCGGCG
CTGGAGTTCC CCCTGCCGTC GAGTTTTATC TGGCAACTCT GCCACCAGCT GCTGCCGGAT
GTTCCCAAGG AGAACGCCTT TACCAAACCT GCCATGACCT GGAAGCTGAT GGAGCTGCTG
CCAGGCCTCT TGTCTCAGGA GGTGTTCGCC CCCCTGGCAA ACTATCTGAA AGACGATGCC
ATACTCACAG ACAGCGCGGC GCCGCACTCG TTAAAACTGT TTCAGCTTTG CAGCCAGATA
GCCGACATCT TCGACCAATA CCTGGTCTAT CGCCCCGACT GGATCTTGGC CTGGGAACAG
GGTGAGGATC GACTGCCCCC CAAGGAGCGT CCGCTAGATG CCAACCAGCA GTGGCAAAGC
CTGCTCTGGC GCGAACTTAT TCACTACAAT CATCACACGC TGAACCAGAG CCGCTATCAC
AGGGCGAACC TGCACCAGGC GCTATTTGAT GCCTTAAGCG ATCCCCTGTG CGATCTTAGC
AAGTTGCCGC CGCGCCTGTT TGTCTTTGGT ATCTCCTCCA TGGCGCCGCA GACCCTGGAA
GTACTCTACT TTTTGGCCAA GCGGATCGAT GTAGTGATGC TCAACCTAAG CCCCTGCCAA
CACTATTGGG GCGACATAGT TGATCCTAAG CTCAGGGCGC GAATGGCGCT GCAATATGGC
GACAAGCAGC AACTCGCCAT CGATTGGGAG AGTAAGCTCG AGGTGGGCAA TCCCCTGCTG
GCCAACAACG GTAAGATGGG CCGCGAGCTG TTAGACCTTA TCCTGGAGTT GCCGGAAAAC
GACACCAACT TCAACTTCGA GTGCTATCAA GATCCGGGCT CAAACAGCCT GCTCCACGGT
GTGCAGCAAG ATATCCTAGA GCTTTGCACC CGCGGCGAAA CCCTAGGACC GGACGCCGAA
CTCTATCTCA CCACTAAAGG CAGACGAGTA CTTAAGATTG ACGATGATTC CCTGACCCTC
AGGAGCTGTC ATAGCCCGCT GCGGGAGCTT GAGACACTGC ACGATCATCT GCTGGAGCAG
TTGTCGCAAT CGGATGGTCT CGCCCCCAAA GATATCGTGG TGATGATGCC GGATGTAGCG
GCCTACGCGC CCTACATAGA TGCGGTATTT GCCTCCAAGC GCGGCGATCA TTTTATCCCT
TACGCCATTG CCGATCGCGG CGCGGCCCAG GAATCCCCGC TGATCAACAG CTTCCTGCAC
CTGCTGGGCC TTAACAAGAG CCGCTTTGCC CTAACGGACA TCTTAGGCAT ACTCGAGGTG
CCCGCCGTGA TGCGCCGTTT CGATCTGGAC GATGATGACC TCCTGCTCAT CCGCCGCTGG
CTGGAGCAGG CGGGCGTGCG CTGGGGAAGG GATCAGCACA GCCGTCAGGC GCAGCAGCTG
CCCGCCTTCG AACACAACTC CTGGGCCTTT GGCATCAAGC GGCTGATCTT AGGCTATAGC
TTCAGCGATG AGGCACCTAT CTACCATGAC AGCCTGGCGC TCCCCGGCGT CGAAGGGCAA
TCGGCCCAGG CACTGGGTAA GCTGCTTAAC TTTATCGAGG CAATCGACGA GTTTAATCTG
GCGCTGGGCG AGCATTGCCC CTTAAGCGTG CGCATTACTC AGCTGCAGAC CCTGGTAGAG
ACCTTCTACG ACTGTGTCGA TGAGGAGCTG AGTCAGAAAC AGGAGCTTTT ACAGGCAATC
ACCCGTCTGA GTGAGGAGCT CACTGCTACA CAGTATCAGA GCGAACTCGA ACTCGAGGTG
ATGCAGAACT GGTTTACCCG TCACCTCACC GAGTCCCGGG TGGGACAGCG TTACCTAGCC
GGTAGCGTCA ACTTCTGTAC CCTGATGCCG ATGCGCTCCA TCCCCTTTAT GCTGGTCTGT
CTGCTAGGGA TGAACGATGG GGTTTACCCC AGGGTACAGC ACCCGGTCGG CTTCGATCTG
GTAGCGCAGG AAGGGCCACG TAAGGGCGAC CGTTCTCGCA GGTTGGATGA CAGATACCTG
TTCCTCGAGG CGCTGCTCTC AGCCAGAGAG CAGCTCTACA TCAGCTATAT CGGCCATAGC
GAGCGGGATA ACAGCGAGCG CATCCCCTCG ATGCTGGTGT CCGAGCTTAT CGAATACTGC
CAGCTCTGCT ATTTGCCGGA AAATTGCGCC CACCTGCTTA AGGGGTCTAA TGCAGATGAC
ACAAGCACAG CAGATATTGC CAAAATCGAG CTGGCCATCT TAGACCAGCT GATCATCACC
ATGCCGCTGC AGCCCTTCGA TGAACGCCTC TATCTGGCAG ACGAGTCTGA AGGCGCAGAG
TGTGAAGGCG CAAAGAGTGA GCCAAGACGT CTTCGCCAGA GCTATAGCGA GCAGTGGTGT
CCCCGAGCCC TTACTGAGCA GGATAAGCAG CACGACGGGG AGCAGGGTGC CAAGCCAGCA
AGTGCTGGTC ATTTCATCGA GGCGCCGCTG AGTCTGGTCG CCGATGAAGA TAAGGGCGAG
CCGCTTGAGC TCTCGGCGCT GATCCGTTTC TACCGCAATC CGGCGCAGTA TTTCTTCAAT
CGCACCCTCA AGCTGGATCT TAATCTCAGC ATACAGGCGG ATGAAAATGA TGAGCCCTTC
GCCCTCAATC CCCTGTCTCG CTATCAGCTG CAATCGACCC TGATAGAAGA TGCGGTCAAA
TCGGGCGATG AGCGGCCATC GAGTGAGTTG CTAGAGCGCT TGCGGCTCTC GGGTCAGTTG
CCACTAGCCC CCTTTGATGA CCTCCTGCTG AAACAGTATC AGCACGATAT TCGCGCCCTG
GTCGGTCGCA CCCTCTATCT GCAGGGAGAG AGCAGCCATA CCCAGGATAT CGACCTACTG
TTGAGCGATA GCGCCGCAAC TGCTCTGGTT GGGCGAATCG ACGGCGTCAG CGCCAAGGGG
CTGGTCAACT ACCGTCCGGG AACGGCGAAC GCACGGGATC TGATCCGTGT CTATCTGCGT
CACCTGTGTC TTAACGCCAG CGTCAGTGAC AATAGCGACG TGGAACGCCA TGAGGCAACG
CCTTGGCAGC GCCACAGCTA TCTGCTCGAT ATCGGCCATT TCCACGCCTT CGCGCCGATA
ACGCCTGAGC AGGCGCTCAA TCAGCTCTCG CTCTGGGCCG AGCATTATCA TCAGGGGCAG
AGCCAGCCCT TGCCCTTCAT GCCAAGAACC GCCTTTGCCT ACGTAGAGGC CGAGGGTGAA
CATATTGAGA AGCTGATCGC CGCCCAGCCC CAATGGCTGG ATGAACAATC TAATCTGGGC
GAAGGCCAGG AGGCTCACTA TCAGCGGCTG TTTACTTTCC CCGATGACTT TAGCGAGGCA
GGCTTTGGCA CCATAGCCAG CACGCTGCTC TCACCTATGC TGAGTCTTTA TCACAAGGCG
CCGCTGAGCG AGTTGGCCGA TTTCGTGGAG GGCCAATAA
 
Protein sequence
MLYLVQSNRM EALAELLANE LQTPLPGQSP LSNEQILVQS PGMSTWLRLA IAKQNQVAAA 
LEFPLPSSFI WQLCHQLLPD VPKENAFTKP AMTWKLMELL PGLLSQEVFA PLANYLKDDA
ILTDSAAPHS LKLFQLCSQI ADIFDQYLVY RPDWILAWEQ GEDRLPPKER PLDANQQWQS
LLWRELIHYN HHTLNQSRYH RANLHQALFD ALSDPLCDLS KLPPRLFVFG ISSMAPQTLE
VLYFLAKRID VVMLNLSPCQ HYWGDIVDPK LRARMALQYG DKQQLAIDWE SKLEVGNPLL
ANNGKMGREL LDLILELPEN DTNFNFECYQ DPGSNSLLHG VQQDILELCT RGETLGPDAE
LYLTTKGRRV LKIDDDSLTL RSCHSPLREL ETLHDHLLEQ LSQSDGLAPK DIVVMMPDVA
AYAPYIDAVF ASKRGDHFIP YAIADRGAAQ ESPLINSFLH LLGLNKSRFA LTDILGILEV
PAVMRRFDLD DDDLLLIRRW LEQAGVRWGR DQHSRQAQQL PAFEHNSWAF GIKRLILGYS
FSDEAPIYHD SLALPGVEGQ SAQALGKLLN FIEAIDEFNL ALGEHCPLSV RITQLQTLVE
TFYDCVDEEL SQKQELLQAI TRLSEELTAT QYQSELELEV MQNWFTRHLT ESRVGQRYLA
GSVNFCTLMP MRSIPFMLVC LLGMNDGVYP RVQHPVGFDL VAQEGPRKGD RSRRLDDRYL
FLEALLSARE QLYISYIGHS ERDNSERIPS MLVSELIEYC QLCYLPENCA HLLKGSNADD
TSTADIAKIE LAILDQLIIT MPLQPFDERL YLADESEGAE CEGAKSEPRR LRQSYSEQWC
PRALTEQDKQ HDGEQGAKPA SAGHFIEAPL SLVADEDKGE PLELSALIRF YRNPAQYFFN
RTLKLDLNLS IQADENDEPF ALNPLSRYQL QSTLIEDAVK SGDERPSSEL LERLRLSGQL
PLAPFDDLLL KQYQHDIRAL VGRTLYLQGE SSHTQDIDLL LSDSAATALV GRIDGVSAKG
LVNYRPGTAN ARDLIRVYLR HLCLNASVSD NSDVERHEAT PWQRHSYLLD IGHFHAFAPI
TPEQALNQLS LWAEHYHQGQ SQPLPFMPRT AFAYVEAEGE HIEKLIAAQP QWLDEQSNLG
EGQEAHYQRL FTFPDDFSEA GFGTIASTLL SPMLSLYHKA PLSELADFVE GQ