| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2122 |
|---|
| Symbol | |
|---|
| ID | 4923488 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2458916 |
|---|
| End bp | 2459533 |
|---|
| Gene Length | 618 bp |
|---|
| Protein Length | 205 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640163707 |
|---|
| Product | putative sulfite oxidase subunit YedZ |
|---|
| Protein accession | YP_001094247 |
|---|
| Protein GI | 127513050 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2717] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTTTCGAT TGCAAGCCAG GCATCTGTTG CCCTTAAAGA TAGCTTTTCA TCTTATCGCC
CTGGTGCCCT TGGTGGTGCT GGTGTGGCGC GTATTAAATG ACCAGCTTGG GGGCGATCCC
GTCCAGTACA TCATCCACTA CACCGGGATG GGGGCGATCA ATTCACTGAT CGCCGTGCTG
CTGATCTCGC CGGTGGCGAA ACACTTTAAG TTAGGCCTCT TGATGCAAAC CCGACGCTTG
GTGGGCCTGT ATGTGTTTGC CTATGCAAGC TTGCATATCT TGGCCTTCTT GAGTCTGGAT
CTGCTGTTCG CCTGGCAACT GCTGCTGAGT GAGATTGTTA AGCGCCCCTA TATTCTGGTA
GGCGCCACTG CCTATCTTAT CTTGTTGCTG CTGGCGATCA CCTCCTTTGC CAGGGTTAAA
CGCGCCATGG GGCGTCGCTG GCAACAGCTG CATAACTGGG TCTATCTGGT GGCCTTGCTG
GCGCCTATCC ACTTTTATTG GTCGGTGAAA TCTGAGGTGA TAGAGCCGAG TCTTTATCTT
ATCGGCTTGA TTTGCTTGCT ACTTATCCGG GTTAATCTCA AGCAGTTGCA GCGGCGCCTG
TCGCTGCGGG CCAACTAG
|
|---|
| Protein sequence | MFRLQARHLL PLKIAFHLIA LVPLVVLVWR VLNDQLGGDP VQYIIHYTGM GAINSLIAVL
LISPVAKHFK LGLLMQTRRL VGLYVFAYAS LHILAFLSLD LLFAWQLLLS EIVKRPYILV
GATAYLILLL LAITSFARVK RAMGRRWQQL HNWVYLVALL APIHFYWSVK SEVIEPSLYL
IGLICLLLIR VNLKQLQRRL SLRAN
|
|---|
| |