| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2103 |
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| Symbol | def |
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| ID | 4923639 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2434634 |
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| End bp | 2435125 |
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| Gene Length | 492 bp |
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| Protein Length | 163 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640163685 |
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| Product | peptide deformylase |
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| Protein accession | YP_001094228 |
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| Protein GI | 127513031 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.614546 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCTGTAC TCGATATATT GACCATTCCC GATGAGCGCC TGAAACGTAA GGCCAAGCCC
GTAGAAGACA TTGCCGCCGT GCAAGGTTTT ATCGATGATC TGATTGAAAC CATGTATCAC
ACAGACGATG GCATTGGGCT CGCCGCTACC CAGGTGGGCA GCGAACACGC CATCTTAGTG
ATTGATCTGT CTGAGGATCG CGATCAGCCC ATGGTGGTGA TCAACCCAGA ATTCGTCGAG
CGTTCGGGCG AGATCGTCGG CGAGGAGGGA TGTCTCTCAA TTCCTGGCTA CCGCGCCAAG
GTGACACGTT TCGAGAAGGT GAAGGTCAAG GCGCTTAACC GTGAGGGTGA GGCCTTTGAG
ATCGAGAGCG ATGACTTCCT GGCAATCGTC CTGCAACATG AGATGGATCA TCTTGATGGC
AAGGTCTTTA TCGAGCATCT GTCGCCCCTC AAGCAGCAGA TAGCACTCAA GAAGGTAAAG
AAATATCGCT AA
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| Protein sequence | MPVLDILTIP DERLKRKAKP VEDIAAVQGF IDDLIETMYH TDDGIGLAAT QVGSEHAILV
IDLSEDRDQP MVVINPEFVE RSGEIVGEEG CLSIPGYRAK VTRFEKVKVK ALNREGEAFE
IESDDFLAIV LQHEMDHLDG KVFIEHLSPL KQQIALKKVK KYR
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