| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2100 |
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| Symbol | |
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| ID | 4923636 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2428211 |
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| End bp | 2431447 |
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| Gene Length | 3237 bp |
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| Protein Length | 1078 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640163682 |
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| Product | DNA polymerase III, alpha subunit |
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| Protein accession | YP_001094225 |
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| Protein GI | 127513028 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACGCTG AATTACAGTA CGCCGAGTTG CACGTCCTCT CGAACTACAG CTTCTTGCGA
GGGGCTTCCC ATCCTCACGA GCTGGTGGAG CAGGCCAAGC GCCTTGGTTA TCAGGCATTG
GCGCTGACCG ACGAATGCTC CTTTGCCGGT GTGGTCAAGG CCCATGAGGC GGCCAAGCGC
TGCGATCTTA AACTGATCCT GGGCGCCGAG TTTCATCTCG ATGAGGGGCT GTTTGTGCTG
CTGGCGCCTT GCCGTTTCGC CTATGGTGAG ATCAGCGCCC TGATCACCAA CGCCAGGCGA
AGCCAGGGCA AGGGTGAGTA CAGGGTGAGC CTGGAGGCCA TCTTGGCTCA GCAGCAGAGC
CTGCTGCTGT GGCGCCCGCC CTCGCTGGCG CAGTTCAGGC AGGCTGGCGA GGCAAGGAGA
GATGAGGCAA GGAGTGATGA TGCAAGGAGT GACTTGGCCG TAAACGATAC GGCAGAGAGT
GAGATGGCTG GGGGCGATAC GGCAAAGGGG AGTGCGGCAC AAAGCGATGA GCCTAATCTG
TTGTCCCGTT ATCGTGACCA CATAGCGAGC ATTGCCTCAC GGCTAGTTGT AGCCTTTCCG
GATCGTCTGC ATCTTTTGAT GGAGCGGCTC TTGCTACCGG GAGAGGCCCT TAACTTGCAA
CAGTGGCAAT GGCTGAGTCA GACTCAGAAG GTCCCCTGTG TGGCGGCCGG TGGCGTGCGC
ATGCACGAGG CGGAGCGTCA GCCGCTGCTG GATATTTTAA CTTGTATCGC CCATGGGCGG
GACCTCGACA GCGGCGTGGC GCTATGCTCC ATCAACGCCG AAGCTAGCCT CAAGCCGATT
GCGGCGCAGC GTAAACGTTA TCCTCAGGAG TGGATCGATA ACGGCCTGGC TCTGGCCCGT
CGCTGCCATT TCTCTTTGGA TGAGCTCAAG TATGAGTACC CGGCCGAGGT GGTACCCGCC
GGCATGCAGG CCAGCGATTA TCTGGCGCAG GCGGTGCGTG AAGGCGCCAG ACGCCGCTTT
CCCGATGGAG TGCCCGATAG GGTGAAGGCG CAGTATGAGA AGGAGCTAGA GCTGATCGCG
GCGATGGCCT ATGAGTATTT CTTTCTGACC ATCTATGACA TCGTCTGTTT CGCCAAGTCT
CAGCAGATCC TCTATCAGGG AAGGGGCTCG GCGGCCAACT CTGTGGTCTG TTATTGCCTG
GGGATCACAG AGGTGGATCC CACTAAGATC AACATGTTGT TCGAACGTTT CATCTCCAAG
GAGCGCAACG AGCCGCCGGA TATCGACGTG GACTTCGAGC ATGAGCGGCG CGAGGAGGTG
ATTCAGTATA TCTATCGCAA ATATGGCCGT GACCGCACGG CGCTGGCCGC GGCGGTGATC
TGTTATCGCT TCAAGAGTGC CATGGGCGAT GTGGGCAAGG CGCTGGGGAT AGATGCCGAG
CAGGTAGCCC TGATGATTAA AAATATCGAT CGCCGGGATC CCAAGCATCA CTGGACGACT
CAGCTTGCCG CCATGTTGCC AGAGGCTGGG CGCGGGCGCA TGTTGCTGCC CTTGGTGCAG
ACGCTGATCG GTTTTCCCCG CCACCTGTCC CAGCACGTGG GAGGCTTTAT CATCTCCGCA
GGGCCCTTGT CTGAGCTGGT ACCCATTGAA AATGCGGCCA TGGCGGATCG CACCGTGATC
CAGTGGGATA AGGATGACCT GGAGAGCCTG GGGCTGTTAA AGGTGGATAT CCTGGCCCTG
GGGATGCTGA CGGCGATCCG TAAGACCTTC ACCTTACTGA GTCTCCCAGA GAAAGCTTTT
TCCATGGCCG ATGTGGCATG GGAGGAGGCC GAGGTCTATC GCATGTTGCA GGCAGGCGAC
AGCATAGGGG TGTTTCAGGT CGAGTCCCGG GCGCAGAGCG CCATGCTGCC AAGGCTGAAG
CCAGCTTGCT ATTACGATCT GGTGGTGCAG ATCGCCATTG TTAGGCCAGG GCCAATTCAG
GGGGACATGG TACATCCCTA TCTGAGGCGG CGGGATGGCC TGGAGGCGGT GGAATATCCC
AGCCCGGCGG TCGAGTCCGT GCTGTCCCGT ACCATGGGGG TACCTATCTT TCAGGAGCAG
GTGATCCAGC TGGCCATGGT GGCCGCGGGC TTCAGTGGCG GCGAGGCGGA TCAGCTGCGC
CGAGCGATGG CGAGCTGGAA GCGTACCGGT GAGCTTGAAA AGTTTGAGGC TAAACTGCTC
CAGGGGATGG CGGCGCGGGG GTACAGCCAA ACATTCGCCG AGCAGATCTA CAGGCAGATC
AAAGGCTTTG GCGAGTATGG CTTTCCCGAG TCTCACTCCG CCAGCTTTGC CCTGTTGGCC
TATGTGTCGG CCTATCTTAA ACATCATTAT CCGGCGGCCT TCTGCTGCGC CTTGCTTAAC
AGTCAACCCA TGGGCTTCTA TAGCCCGTCG CAGCTTATTC AGGATGTGCA GCGTCACGAT
GTTATGGTAC TGCCGGTATG TGTCAATCAC AGTGACTGGG ATAATAGCCT GGTGCCCCTG
CTGGAGGCTG AGCAGCCTGC GATACGTCTG GGCTTTAGGC AAGTGAAGGG ACTCAGGCTG
GAGGAGATCA AGACCCTTAT CGCGGCGCGC CCCGAAGGCG GCTTTACCCG GGTCGAGCAG
CTCTATGAGC TAGGTTTATC TCAGGGCTGT TTGACCCTGC TGGCCAGCGC CGATGCCCTG
TTGACGCTGG CCGGGCATAG GTATCAGGCG CGCTGGCAAC TCAGTGCCTA TCAGCCGAGC
CTTCCGCTGT TCGATGACTT GCCAGCTGTC GCCAGTGAGG TGGTGTTGGC GCCCCCAAGT
GAGATGGCGG CCATGCAGAG CGACTATCGC CATCTAGGGC TCAGCCTGGG GCGCCATGTT
ATGGCTCAAC TTAGAGGGCT GGCGCCATTT GTGGGTTGTC GCCACGCCAG TGAGTTAGCC
GATTGTCGTC ATGGGCAGCT TGTGCATGTG GCGGGCGTGG TGGTGGGGCG TCAGCGCCCC
GGTACCGCCT CCGGGGTTAC CTTCGTGACC TTAGAAGATG AGACGGGCAA CATCAATGTG
ATCGTCTGGA GCGCCACGGC CAGGGCGCAG CGACAGCCAT TTTTAACATC AAAAATTTTA
AAGGTAACTG GGGTGCTTGA GACCCAGTCT GGTGTGTCAC ACGTTATCGC GGGCAGGCTG
GAGGATTTAT CGACTCTGGT GAATGATTTT GAACTAAGTT CGCGGGATTT TCGTTAG
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| Protein sequence | MYAELQYAEL HVLSNYSFLR GASHPHELVE QAKRLGYQAL ALTDECSFAG VVKAHEAAKR
CDLKLILGAE FHLDEGLFVL LAPCRFAYGE ISALITNARR SQGKGEYRVS LEAILAQQQS
LLLWRPPSLA QFRQAGEARR DEARSDDARS DLAVNDTAES EMAGGDTAKG SAAQSDEPNL
LSRYRDHIAS IASRLVVAFP DRLHLLMERL LLPGEALNLQ QWQWLSQTQK VPCVAAGGVR
MHEAERQPLL DILTCIAHGR DLDSGVALCS INAEASLKPI AAQRKRYPQE WIDNGLALAR
RCHFSLDELK YEYPAEVVPA GMQASDYLAQ AVREGARRRF PDGVPDRVKA QYEKELELIA
AMAYEYFFLT IYDIVCFAKS QQILYQGRGS AANSVVCYCL GITEVDPTKI NMLFERFISK
ERNEPPDIDV DFEHERREEV IQYIYRKYGR DRTALAAAVI CYRFKSAMGD VGKALGIDAE
QVALMIKNID RRDPKHHWTT QLAAMLPEAG RGRMLLPLVQ TLIGFPRHLS QHVGGFIISA
GPLSELVPIE NAAMADRTVI QWDKDDLESL GLLKVDILAL GMLTAIRKTF TLLSLPEKAF
SMADVAWEEA EVYRMLQAGD SIGVFQVESR AQSAMLPRLK PACYYDLVVQ IAIVRPGPIQ
GDMVHPYLRR RDGLEAVEYP SPAVESVLSR TMGVPIFQEQ VIQLAMVAAG FSGGEADQLR
RAMASWKRTG ELEKFEAKLL QGMAARGYSQ TFAEQIYRQI KGFGEYGFPE SHSASFALLA
YVSAYLKHHY PAAFCCALLN SQPMGFYSPS QLIQDVQRHD VMVLPVCVNH SDWDNSLVPL
LEAEQPAIRL GFRQVKGLRL EEIKTLIAAR PEGGFTRVEQ LYELGLSQGC LTLLASADAL
LTLAGHRYQA RWQLSAYQPS LPLFDDLPAV ASEVVLAPPS EMAAMQSDYR HLGLSLGRHV
MAQLRGLAPF VGCRHASELA DCRHGQLVHV AGVVVGRQRP GTASGVTFVT LEDETGNINV
IVWSATARAQ RQPFLTSKIL KVTGVLETQS GVSHVIAGRL EDLSTLVNDF ELSSRDFR
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