| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2096 |
|---|
| Symbol | |
|---|
| ID | 4923632 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2422909 |
|---|
| End bp | 2424960 |
|---|
| Gene Length | 2052 bp |
|---|
| Protein Length | 683 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640163678 |
|---|
| Product | thiamine biosynthesis protein ThiC |
|---|
| Protein accession | YP_001094221 |
|---|
| Protein GI | 127513024 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
|---|
| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAACAC GTCGTGAAAT GCGAGCAGAG GCCCAGGCCT TTATTGATAA CCTCAAACCC
TTACAACACC CTAATTCGCA AAAATTTTAC CTAAACGGCA GCAGGCCGGA TCTCAAGGTC
GCCATGCGGC AGATCTATCA GTCAGACACC CTGATTGGCG GCACGGCCGA GGCGCCTGTC
TATGAGAAGA ATCCCCCCAT CACAGTCTAT GACTGCGCCG GGCCCTATTC AGATCCCGAG
GCCGATATCG ATGTGCGTCG TGGTCTTGTT AAGCTGCGTA GCGAGTGGAT CGCCGAGCGC
AGCGATACCC AGGAACTTGA GCAGGTAAGC TCAGGTTTTA CCCAGCAGCG TCTGGCCGAT
GAGGGGCTAG ATCATCTGAG GTTTGAGCAA CTGCCCAAGC CAAGACGCGC CCTTGAAGGC
AGGGTAGTGA CTCAGATGCA CTACGCCAGA CGCGGTATCA TCACCCCAGA GATGGAGTAT
GTGGCCCTGC GTGAGAATAT GGCTCGCGAG ACAGTGACCG AAGAGGTGCT CAATCAGCGC
GCGCCGGGTG AGAGTTTCGG TGCCAAGCTA GGTGAGCCGA TCACGCCGGA GTTTGTGCGT
CAGGAGCTGG CGGCGGGCCG GGCAATCTTA CCGCTTAACA TAAACCACCC CGAGGCCGAA
CCTATGATCA TCGGCCGAAA CTTCCTGGTG AAGGTCAACG CCAACATAGG CAACTCGGCG
GTCACCTCAT CTATCGAAGA GGAGGTGGAG AAGCTGGTGT GGGCCACCCG TTGGGGCGCG
GATACCGTGA TGGACCTCTC GACCGGCCGT TATATCCACG AGACCCGCGA GTGGATCATA
CGTAACTCGC CGGTGCCAAT AGGGACTGTG CCCATCTATC AGGCGCTGGA GAAGGTCAAT
GGCATCGCCG AAGATCTCAC CTGGGAGATC TTCAGAGATA CCCTGATCGA GCAGGCGGAG
CAGGGGGTGG ATTACTTTAC CATTCACGCC GGCGTGCTTC TGCGTTATGT GCCCATGACG
GCCAAACGCC TCACTGGTAT TGTCTCCCGT GGCGGCTCCA TCATGGCCAA GTGGTGTCTC
TCTCATCACA AGGAAAATTT CCTCTATGAG CACTTTGATG AGATCTGTCA GCTGTGCGCG
GCCTATGACG TCTCCCTCTC GCTGGGTGAT GGCATGCGTC CAGGCTCCAT CGCCGATGCC
AACGACGAGG CGCAGTTTGC CGAGCTGGAA ACCTTAGGCG AGCTGGTTAA GAAGGCCTGG
CAGTATGACG TGCAGACCAT CATCGAAGGG CCGGGTCATA TCCCGATGCA GCTTATCAAG
GAGAACATGG ATAAGCAGCT CGAGCTGTGT GACGAGGCAC CGTTTTATAC CCTAGGCCCT
CAGACCACCG ACATTGCTCC AGGTTATGAT CACTTCACCT CAGGCATAGG GGCGGCGATG
ATCGCCTGGT ATGGCTGCGC AATGCTCTGC TACGTAACGC CCAAGGAACA TCTTGGTCTG
CCAAACAAGG AAGACGTAAA GCAAGGGCTG ATCGCCTATA AGATTGCCGC CCATGCCGGC
GATGTCGCCA AGGGGCATCC TGGCGCGCAG ATCCGCGACA ACGCCTTGTC TAAGGCGAGG
TTCGAGTTCC GCTGGGAAGA TCAATACAAC CTGGGGCTGG ATCCCGATAC CGCCAGGGCG
TATCACGACG AATCACTTCC GCAGGAGTCG GCCAAGGTCG CGCATTTCTG CTCCATGTGC
GGTCCCAAGT TCTGCTCGAT GAAGATCACC CAAGAGGTGC GCGAATACGC TGCGGCCCAA
GCGACCGATG TAAGGGAGAT TGAGGTTGAG CAGATTGACG TTACTGCTAG CGCGCCGAAG
GCAGATATTC AACAAGGGAT GGCGCAGATG TCGGCGCAGT TTAAGCAAAG TGGTAGCGAG
CTCTATCACA GTGCGATAAG ACAAAGCCCT GGCGTTGAAA GCACCTCTCT CGAAAGCACC
TCTCTCGAAA GTACCGTTCT TGAAAGTACT TCTCTTGAAA GTACGGCTCT CGAAAAAGCA
AAAGAGGTGT AG
|
|---|
| Protein sequence | MSTRREMRAE AQAFIDNLKP LQHPNSQKFY LNGSRPDLKV AMRQIYQSDT LIGGTAEAPV
YEKNPPITVY DCAGPYSDPE ADIDVRRGLV KLRSEWIAER SDTQELEQVS SGFTQQRLAD
EGLDHLRFEQ LPKPRRALEG RVVTQMHYAR RGIITPEMEY VALRENMARE TVTEEVLNQR
APGESFGAKL GEPITPEFVR QELAAGRAIL PLNINHPEAE PMIIGRNFLV KVNANIGNSA
VTSSIEEEVE KLVWATRWGA DTVMDLSTGR YIHETREWII RNSPVPIGTV PIYQALEKVN
GIAEDLTWEI FRDTLIEQAE QGVDYFTIHA GVLLRYVPMT AKRLTGIVSR GGSIMAKWCL
SHHKENFLYE HFDEICQLCA AYDVSLSLGD GMRPGSIADA NDEAQFAELE TLGELVKKAW
QYDVQTIIEG PGHIPMQLIK ENMDKQLELC DEAPFYTLGP QTTDIAPGYD HFTSGIGAAM
IAWYGCAMLC YVTPKEHLGL PNKEDVKQGL IAYKIAAHAG DVAKGHPGAQ IRDNALSKAR
FEFRWEDQYN LGLDPDTARA YHDESLPQES AKVAHFCSMC GPKFCSMKIT QEVREYAAAQ
ATDVREIEVE QIDVTASAPK ADIQQGMAQM SAQFKQSGSE LYHSAIRQSP GVESTSLEST
SLESTVLEST SLESTALEKA KEV
|
|---|
| |