Gene Shew_2089 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2089 
Symbol 
ID4923625 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2416453 
End bp2417850 
Gene Length1398 bp 
Protein Length465 aa 
Translation table11 
GC content57% 
IMG OID640163671 
ProductSrpA-related protein 
Protein accessionYP_001094214 
Protein GI127513017 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.885668 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCTGGCG CCATGACTAC GCCCCCCTTA ACGGCGATGC GCCTCGGTGC ATTGCCGTCT 
TCTTCTGCTT CAACTTCTTC AATTTCCTCA TCTTCTACAG CTTCTTTATC TTCTTCAAAT
AGGGCTTCAA GTTCCCAAAG TACCGCTTCA AGTTCCATAA GCACTGCTTC AACGCCAGCA
GCCTCTCATC AAACGTCACA TGCCAGCCTG AAGGCCAACA CGGCGGTATC CTCGACGCCT
TCGGGTGCAA CCAGTCTACT TACCTCTGGT AACTTAAGTT CTGGCTTGTC AACACAAAGG
GGGTCAAGTG CGAGCCGTCC TGTCTTCAAT GGCAGTTCGT CAGGTCAAGG GGGATATAGC
CTTTCCAGCG GGCCTCTCGG AGTTGGAGGC CTACTCAATC AAACGGCAAG CTCTGGTTTT
AGCAGTGGCT TGAGCAAAGG CATGGGCAAT GGCGGTGGGG TGGACGGCGC TTCGACACTT
CCGGATGCGG CAGGTAGAGT AGCAGGCTCA GGTTTACCCC CTGGTTCGCG AGGTAGCAAT
GGCAAACCAA ATGCGAGTAC AGCAGGGGGA CAAGGCGGTG TTGACGTTAG TCGCGGCAGC
GCAATTGAGG GGGAAAAGCC GGTAGTCGAT ATCTTTGGTG GGGCCGAGGA AACCCGCGGC
GAGGCATACA ACCCCTTCGC GGATAAGCAA GAGGGAAAGG ACGCACCAAG TGATGAGAGC
CGCTCACAAG CCCCTGAACT TGCCCGCCAG GAAGCTGAGC TGAAAGAGCT GTCCAGACGT
GACGCCGAGG TGAGGGCCCA TGAGCAGGCT CACGCCAGCG TTGGCGGTAC CTTCGCGCGT
AGCCCAAGTT TTAAGTATGA ACAGGGGAGC GATGGCAGAC GATATGCGGT TGATGGCGAG
GTGGCGATCG ATATCTCCTC CGTGCCTGGG GATCCCCTGG CTACCCTGAA CAAGATGAAG
CAGGTCTACG CGGCGGCGAT GGCCCCTGCG ACCCCATCGA TGGCAGATAT CCGGGTGGCC
AGCGAAGCCC TGCGTAAGAT GAATTCGGCA AAGGCCGAGC TTGCCAAAAC GCGTCAGCAA
AGCGCCATCA CCCCTGAGCA GATGAAGCCG CTTATCGATG CCGGTAAGAG TGAGCAGCAG
CGCCAGCTGC CAGAGCCAGT GACGCCAAAG GTGAGCGGTA GTGTGGATGA TCAGGGCAAG
ATCTCTGCGG CCAGAATCGA TTCCCCCTCG CCGCTAGATG ATGATAGAAG CCCTTCACAA
TCGATAGAGC GGATCAGTCG CCAGCTTCTG GCGGCCGATG GTCTTCTGTT TAGCGCTGAA
GCCCTGTCGA TGCGCTACCA AGCGGGCGAG TCTGACGCTT CTTCAACATC TTCCTCATCC
TTCGCCTTCT CCCTCTAA
 
Protein sequence
MAGAMTTPPL TAMRLGALPS SSASTSSISS SSTASLSSSN RASSSQSTAS SSISTASTPA 
ASHQTSHASL KANTAVSSTP SGATSLLTSG NLSSGLSTQR GSSASRPVFN GSSSGQGGYS
LSSGPLGVGG LLNQTASSGF SSGLSKGMGN GGGVDGASTL PDAAGRVAGS GLPPGSRGSN
GKPNASTAGG QGGVDVSRGS AIEGEKPVVD IFGGAEETRG EAYNPFADKQ EGKDAPSDES
RSQAPELARQ EAELKELSRR DAEVRAHEQA HASVGGTFAR SPSFKYEQGS DGRRYAVDGE
VAIDISSVPG DPLATLNKMK QVYAAAMAPA TPSMADIRVA SEALRKMNSA KAELAKTRQQ
SAITPEQMKP LIDAGKSEQQ RQLPEPVTPK VSGSVDDQGK ISAARIDSPS PLDDDRSPSQ
SIERISRQLL AADGLLFSAE ALSMRYQAGE SDASSTSSSS FAFSL