Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2080 |
Symbol | |
ID | 4923616 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 2404551 |
End bp | 2407355 |
Gene Length | 2805 bp |
Protein Length | 934 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640163662 |
Product | diguanylate cyclase |
Protein accession | YP_001094205 |
Protein GI | 127513008 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAGCCC GTTTTGTTAT GGGAACTGCC GCGTTGACGC TGAGTTTAAT GCTTAGTTTT CAGGTGTCTG CAGAAGAGCA GCAAGCCCCG CTAGTCTTGG TAATGGGGGA GGACAGCTAC CCTTATCAGT TCGTCGATGA GAATGGCGAT GTCAAGGGGG TCTTGGTGGA TCTCTGGCGT GAGTGGTCGT CTCAGACTCA GGTGCCCGTT GTATTTGTCG CCCGTCATTG GCAGGACTCC TTGAAACAGC TGGCGCAGGG GGATGCCGAT ATCCATATTG GCCTTGGGAT CACCAAGGAG CGGGATAAAG ATTTCGATTT CGCGGCGCCC ATCGCCTATG TCAGTACCTA TCTCTATGTG CGCAACACGC TAAAGGGTAA GAAGAGTTTT AGCGATCTTC AGCCCTATCG CATCGGCATA GTGACCGGCT CATCCCATGA GTCCATTCTC AATCAGCAAG TTAACGGATT AAGTTACCGC TACTACAATA GCCGCGCCGA ACTGCTCCGC GGTGTGGTGG CAGGCGAAGT GGATGTCTTT GCCGGCATGG AAGGCTACTT AAAGGATAAC GCCGTTAGCC GCGCCGTTCT GGAAGAGTTT CCCCTAGATA ATCGTTTGCT TATCAAGAAG ACGGCGCTGG TGCCCGCCGT CAGCAAGGGA CGGCTGGACC TTATCACAGA GATCAACCGC GGGTTCGACC GCTTGAGTCA AACCAGCCGC GCCGAGATAG ACAAGCGTTG GCTAGGTTTT AGCCATGACG CCAACACCTT AGTGATTGCC ACCACGACAG GTATCCAACC CTTTGTCGAT ACCGGCGGCG ATGGCGAGCC ACACGGCCTC TATATCGACA TCTGGAAGCT CTGGTCTAAG AAGACGGGGA TAGAGGTGGA GTTTCGCCCG GCCGCTATGG AAGATGGCCT GGATGAACTC AAGTTTCACC GCGCCGATAT CCATGTGGGC TATCCCGAAA GCGATACCAT GAAGACCAAT CTCACCCGTG CCTGGCGCAC CTATCAGGTG AAGAGTCGTC TGTTCAGTTA TGGTAAGGCC ATCAATAGTC TGGATGAGCT AAAGGGTAAG CGTGTCGGCG CCGTTCCCAC CGCGCCTTAT CTGGATAAAC TCAAGCAGGC GTTGCCAAAC TCCGAGCTCA AGCTCTATAC CGATGTGACC CAGATGATCC AGGCCGCCCA GCAGGGGCAT ATCGCCGCCT TCGTGGCGGC ATCGGCTTGG ACCCAGCACT ATCTGCTGCG GGCTGAATCC TGGTCTGACT TTCACCAGTA TCGCAAGCTG GCCTTCACCA CAGACATCTA CGCCTTGACC CGCAATGAGG ACAAGGGACT GGCTCAGCGT ATTGCGGCGG GCTTTCGCCT GATCAGCAAT GCCGAGCTCG CCGCGATAGA GAATAAATGG ATCTTGGATA GAGACGACAG GAGCGTGCAG TCTTTGCTTA ATCCGCTCGC TATCACTGAG GAGCAGCGCC GTTATCTAGA CAGCCTGGGC ACGCTTAAAG TGGGCTACCT TGCCGCCTGG GCGCCCATGG AGTATCAGGG GCCGTCCGGT GAGTTTATGG GGATCAACAG CGAGATCAGC CACTGGGTCG CCGAGCAGCT GGGCTTAACC ATAGAGGGTG TACCGTTCGA TCGCTGGAGC AGCCTGCTAG AAGCACTTAA ACAAGGCGAA ATCGATATCG TCGGCAGCGT CGCTCACACG CCAGAGCGGG AACGGGAGAT GCTCTTTACC ACCCCCTATT GGCCATCGCC CTGGGGCCTG GTGACTAACC TCAGTCAGGT GACTGTGTTT AACCTGAGTC AGATGAGTGG TAAGCGTCTG GCGATTGTCG AGGGGTATCA TCTCATCGCC AATCTGATGA ACAAGGCGCT CGGAATCGAG CTGGTGATCG TGCCCAACAG CCGCGCCGGC GTCGATGCGG TGGCCCAGGG CAAGGCCGAT GCCTTCATCG AGAAGGTGAT CAACATGGCT ATGGTGCTTA AGGAGTCAGA CTACAAGGCA CTTAAGATGT CTGTGCTGGC GGACTTTTCC CAGCAGCAGA GCCATTTCGC CCTGAGCCCT AAGTTTGCTG CGCTGGTGCC CCTGTGGGAT CAGGCCATCG CCCAGATCAC CCCAGAGCGG CAAGAGGAGA TTTATCAGCA CTGGGTAAAA GAGGAACCTA GCAGTTGGAA GACTTGGGTC AACTATCAGA GCGCCTTCTA TCTTCTGGCG CTACTCAGCT TTGTGGTGTT TGTCTATCTT ATTTGGCGCG CTCAGCGTAG CCGCCTGGCG GCGGCCAAGG AGCTTGCCCA TGAGCTGACG CGGGCAGGGC AGTTCGATGC ACTCACCGGT TTGCCGAATC GCAGCCTGCT CGATGACAGA TTGCAGCAGT CTGTGCTCAT ACATCGCCGC GAGATGCAGC CCTTTGCCGT ACTCTTTATC AGCTTCGATA ACATGCGTGA GATCAACCAG ACCTATGGCC ATCAGGTGGG CGACAGGGTA TTGGCCAAGG GCGCGCAGCG CCTCAAGTCT GCGGTGCGTA AGTCTGATAC CCTGGCGCGT TTCGGCGGCA ACGAATTTGT GATGGTGCTT AATCGCAGCA AAGATCTCGA TACCGTGTGC CAGGTGGCCG ATGGCATAGT CGGTGGCTTT AGCGCCCCCT TTGCGATCAA CGGCCTGGAT GTGGCACTAT CGGTCAGCAT AGGGGTGGCC ATGTTCCCAA GCGATGGCGA TACTGTGGTG GAGCTACTCA AGACCGCCGA CAAGCTGATG TCGCGGGCGG TGAAACAGGG CGGGCGCTGT TACCAGAGTG CCTGA
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Protein sequence | MIARFVMGTA ALTLSLMLSF QVSAEEQQAP LVLVMGEDSY PYQFVDENGD VKGVLVDLWR EWSSQTQVPV VFVARHWQDS LKQLAQGDAD IHIGLGITKE RDKDFDFAAP IAYVSTYLYV RNTLKGKKSF SDLQPYRIGI VTGSSHESIL NQQVNGLSYR YYNSRAELLR GVVAGEVDVF AGMEGYLKDN AVSRAVLEEF PLDNRLLIKK TALVPAVSKG RLDLITEINR GFDRLSQTSR AEIDKRWLGF SHDANTLVIA TTTGIQPFVD TGGDGEPHGL YIDIWKLWSK KTGIEVEFRP AAMEDGLDEL KFHRADIHVG YPESDTMKTN LTRAWRTYQV KSRLFSYGKA INSLDELKGK RVGAVPTAPY LDKLKQALPN SELKLYTDVT QMIQAAQQGH IAAFVAASAW TQHYLLRAES WSDFHQYRKL AFTTDIYALT RNEDKGLAQR IAAGFRLISN AELAAIENKW ILDRDDRSVQ SLLNPLAITE EQRRYLDSLG TLKVGYLAAW APMEYQGPSG EFMGINSEIS HWVAEQLGLT IEGVPFDRWS SLLEALKQGE IDIVGSVAHT PEREREMLFT TPYWPSPWGL VTNLSQVTVF NLSQMSGKRL AIVEGYHLIA NLMNKALGIE LVIVPNSRAG VDAVAQGKAD AFIEKVINMA MVLKESDYKA LKMSVLADFS QQQSHFALSP KFAALVPLWD QAIAQITPER QEEIYQHWVK EEPSSWKTWV NYQSAFYLLA LLSFVVFVYL IWRAQRSRLA AAKELAHELT RAGQFDALTG LPNRSLLDDR LQQSVLIHRR EMQPFAVLFI SFDNMREINQ TYGHQVGDRV LAKGAQRLKS AVRKSDTLAR FGGNEFVMVL NRSKDLDTVC QVADGIVGGF SAPFAINGLD VALSVSIGVA MFPSDGDTVV ELLKTADKLM SRAVKQGGRC YQSA
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