| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2069 |
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| Symbol | rnfD |
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| ID | 4923433 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2391886 |
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| End bp | 2392938 |
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| Gene Length | 1053 bp |
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| Protein Length | 350 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640163651 |
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| Product | electron transport complex protein RnfD |
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| Protein accession | YP_001094194 |
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| Protein GI | 127512997 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
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| TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATTTA AGTTGGCCTC ATCGCCACAC CTATCCACCA AGGCACAAAC CCGTGGCCTG
ATGTTTAAGG TCATGCTGTG CGCCCTGCCC GGCGCGCTGG CCCAGTGCTA CTTTTTCGGT
TGGGGAACCC TGATCCAGAT AGCCTTGGCT ATTGCCATCG CAGTGGCCAC AGAGGCGGCG
GTATTAAAGT TACGTGCGCG TCCCGTGGGT AAGACCATCC GTGATAACAG CGCGGCCCTT
ACTGGCCTGC TCATCGGTGT GGCGATTCCT GCCTTGGCAC CTTGGTGGAT TGCGGCCATA
GGCGTAATAT TTGCCATCTT AGTGGTCAAA CAGCTCTACG GCGGCCTTGG CAACAACATC
TTCAACCCGG CCATGGCCGC CTATGTGATG CTGCTGATCT CCTTCCCGAT GCAGATGACC
ACCTGGGTCG CCCCAAGTGG CGCCGCCCTG CATGATCTGG GGCTGATGCA AAGCCTGAGT
GTCATCTTTC AGGGCGCCGA CGCCGAGCAG GTCCTCGCCT ATCGCGCCGG TATAGACGGC
GTGACCATGG CCACCCCTCT GGATGCGGTT AAGACAGGCC TCTCCACCGG CCTGACCCTG
GATGAGATTT TAACTAAGGC CAGCTTTAGC GACGGCTTTG GCATCGGCTG GGCGCTAATA
AACCTGGCCT ACCTGGCTGG CGGTCTGGTG ATGCTCAAGC TTAAGCTGAT CCGCTGGCAG
ATAAGCACCG CCATCCTGGC CAGTTTGTTT GTCTGTGCCA GCATAGGTTA TCTGCTGAGC
CCTGATACCC ACATGGGGCC CTTGCTGCAT CTGTTTTCCG GCGCCACCAT GTTAGCGGCC
TTCTTTATCG CTACCGATCC TGTGACCGCA GCGACCAGCA CCCGCGGCCG ACTGATCTTC
GGCTCCCTGA TCGGTCTCCT GGTCTATCTG ATCCGCAGCT TCTGCGGCTA TCCCGATGCC
TTTGCCTTTG CCGTGCTGCT GGCAAACCTG TGCGCGCCCT TTATCGATTA TTATGTCAAA
CCCCGAGCCT ACGGCCACAG AGCAAGCCGC TAA
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| Protein sequence | MAFKLASSPH LSTKAQTRGL MFKVMLCALP GALAQCYFFG WGTLIQIALA IAIAVATEAA
VLKLRARPVG KTIRDNSAAL TGLLIGVAIP ALAPWWIAAI GVIFAILVVK QLYGGLGNNI
FNPAMAAYVM LLISFPMQMT TWVAPSGAAL HDLGLMQSLS VIFQGADAEQ VLAYRAGIDG
VTMATPLDAV KTGLSTGLTL DEILTKASFS DGFGIGWALI NLAYLAGGLV MLKLKLIRWQ
ISTAILASLF VCASIGYLLS PDTHMGPLLH LFSGATMLAA FFIATDPVTA ATSTRGRLIF
GSLIGLLVYL IRSFCGYPDA FAFAVLLANL CAPFIDYYVK PRAYGHRASR
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