| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2068 |
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| Symbol | |
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| ID | 4923432 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2389271 |
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| End bp | 2391883 |
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| Gene Length | 2613 bp |
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| Protein Length | 870 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640163650 |
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| Product | electron transport complex protein RnfC |
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| Protein accession | YP_001094193 |
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| Protein GI | 127512996 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4656] Predicted NADH:ubiquinone oxidoreductase, subunit RnfC |
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| TIGRFAM ID | [TIGR01945] electron transport complex, RnfABCDGE type, C subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.583585 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTAACCT TGTTAGAACA GATAGATAAA GGCACACTCT GGCGTATCCC CGGCGGTATT
CACCCACCCG AACATAAAAC GCTTTCCAAC CAGAGCAAGA TAAGCCGTTT GCCCCTTGCG
GACCACTACC TCATTCCAGT CCCGGGCGTC GGCGAAAACT GCACATTAGC CGTGAAAGTC
GGCGATACTG TCACCAAGGG ACAGCCCCTG ACCCTGGGGG AAGGCTTTCG CCATCTGCCG
GTCCATGCCC CTGTCTCAGG CAGAGTCGTC GCCATCGAGG AGCGCGCCAG CAACCACGCC
TCTGCACTAC CCGTGCTCAC CTGCGTGATT GAAAACGATC ATCAGGAAAA GTGGATCGAA
AGCGTTCATA CGCCACTGAG TCTTGAACAA GTGGCCGAGA TGGACAACGA CGACATCATC
AGGCGGATTC AGTCGGCTGG CATAGCGGGC CTTGGCGGAG CCGCCTTCCC AACCCATATC
AAGCTCAAAC CGGTCAGCGA AATTGAGCTG CTGATCATCA ACGGCGTCGA GTGTGAACCC
TATATCACCT CTGACGACAA ACTGATGCAG GAAAGCTGCG ATGAGATAGT CCGCGGTATA
GAGATAGTCC ATCAGTTACT CAGCCCGAAA CGCATTATTG TCGCCATCGA AGATAATAAA
CCCGAGGCCG TCGAGCAGAT GGGCCATGCG CTCAACCGCA GCCAGCTGCC GAGTCACTGC
GCGCGAGTGA GCAAGATCCC CACGCTCTAT CCGTCGGGCG GCGAGAAGCA ACTTATTCAG
ATCCTCACAG GACAAGAGGT GCCATCGGGC GCCATTCCGG CCAACCTGGG CATTCTGGTG
CAAAACGTCG GCACCGCCTA CAGCATAGCC CAGGCAGTCT ATCGCAACAT GCCGCTGATC
GAGCGCGTAG TCACCCTGAC GGGCCAAAAT ATCGCTAAAC CCGGCAACTA CTGGGTCCCT
ATCGGCACGC CAGTCGAGCA CCTGCTAGAG GTGGGTCAGT TTAGAGGCGA TGCCAATGCC
CCGGTGATCA TCGGCGGCCC CATGATGGGC TACATGCTGC CGAATGTAGC GGCGCCTATC
ACCAAGGGCA CCAACTGTGT TCTGATGCCG AGTGAGCAAG AAGTAGCCCC GCCGAGTCCG
GAGCAGCCCT GCATCCGCTG CGGCGAGTGT GCCCAGGCCT GTCCGGCGCA GTTGCTGCCC
CAGCAGCTGT TCTGGCATGC CAAGGCCCAG GAATATGACA AGGCTGCCAG CTACAATCTG
CGTGACTGTA TCGAGTGTGG CTGCTGCAGC TATGTCTGCC CTAGCGACAT TCCACTAGTG
GAATATTATC GCGTCGCCAA ATCTGCCCTG CGCCAAGAGG CGGAAGAGAA GAAACAGGCG
GAGCTTGCCA AGCAGAGATT CGATTCCCGC ACCCTGCGCC TCGAGCAGGA GAAACAGGCG
CGTGAAGAGA AGGCCAAACA GGCGGCCGAG CGTCGCAAGG CGCAGATGAC AGGCTCTGAT
AAAGATGCCG TCGCCGCCGC CATGGCAAGA ATCCAGGCCA AGAAGGCCGC AGAAGCCCAA
GCCTCGGCAG GCGCTACGAC AGAGAAGCCA CAAGACAAGG TCGCAGCAGC TATCGCGAGG
GCCAAGGCTA AGAAGGCCGC GCAGAAAACT TCCAGCGAAA CAGAAACTGA GACGAGCGAG
CAGCCAGCAT CACAAGTCAA GGGTGCCGAC AATAGAGAAT CGGCCGCTGT GAGTCAGAAA
GAGAAAGTCG CCGCCGCCAT CGCCAGGGCC AAGGCGAAGA AAGCCGCACA AGACACGGCC
GATACCACTG AAGCAAGCCA AGCGCCCGCT CAGCAAGGTG CTGAGACTGC GCCATTGAGC
CAGAAAGATA AGGTCGCGGC GGCAATCGCC CGCGCCAAGG CCAAGAAAGC CGCTCAGGCA
GGCGCTAATG ATCAGCAAGC CGCGACTGTT GAGCACAGGG ACGAGCCAAT TGAGCGCACT
GGCGAGACTG CTAAGCCAAG CGAAAGCCAG AGTGCTAGCA CAGACGATAC CGAAGGCACC
GAGAAGGCAG ATGCTGCGGC TGCTAAGAAG GCAAAAATTG CCGCCGCCAT TGCTAAGGCT
AAAGCCAAGA AGGCACAGCT GGACGCTGGG GCTTCCGATG AGCCAGACGT CATGACCCCA
GCTGAGGATA TTGAAGCCAA CAGTCCTGAA GCCATCAAGA AGGCAAAGAT AGCCGCGGCA
GTCGCCAAGG CCAAGGCGAA GAAGGCACAG CAAGCCGGAG CAGGCGATGA GCCAAAAGCG
GAAATCACAA CTGATGCAGA GCCAGCTAAA GCTGAGGCGA ACGATGATGC CGAGGCCGGT
AGCCCTGAAG CGATCAAGAA GGCCAAGATA GCCGCCGCAG TCGCCAAGGC CAAGGCGAAA
AAAGCCGCTC AGGCAAGCGC AGGTGATGAA CAACTCGCGC CCAGTGAAAG CCAGACCGAT
ATCGAAGACT TTGCCGATGC AGAAGACGTT GCCGATACCA GCAGCCCAGA GGCGATCAAA
AAGGCCAAGA TAGCTGCCGC TGTCGCCAAG GCCAAGGCGA AGAAGCTGGC TAAGGCCGAG
GCAGAGACCC CAAACAATGA GCACAAGGAT TAA
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| Protein sequence | MLTLLEQIDK GTLWRIPGGI HPPEHKTLSN QSKISRLPLA DHYLIPVPGV GENCTLAVKV
GDTVTKGQPL TLGEGFRHLP VHAPVSGRVV AIEERASNHA SALPVLTCVI ENDHQEKWIE
SVHTPLSLEQ VAEMDNDDII RRIQSAGIAG LGGAAFPTHI KLKPVSEIEL LIINGVECEP
YITSDDKLMQ ESCDEIVRGI EIVHQLLSPK RIIVAIEDNK PEAVEQMGHA LNRSQLPSHC
ARVSKIPTLY PSGGEKQLIQ ILTGQEVPSG AIPANLGILV QNVGTAYSIA QAVYRNMPLI
ERVVTLTGQN IAKPGNYWVP IGTPVEHLLE VGQFRGDANA PVIIGGPMMG YMLPNVAAPI
TKGTNCVLMP SEQEVAPPSP EQPCIRCGEC AQACPAQLLP QQLFWHAKAQ EYDKAASYNL
RDCIECGCCS YVCPSDIPLV EYYRVAKSAL RQEAEEKKQA ELAKQRFDSR TLRLEQEKQA
REEKAKQAAE RRKAQMTGSD KDAVAAAMAR IQAKKAAEAQ ASAGATTEKP QDKVAAAIAR
AKAKKAAQKT SSETETETSE QPASQVKGAD NRESAAVSQK EKVAAAIARA KAKKAAQDTA
DTTEASQAPA QQGAETAPLS QKDKVAAAIA RAKAKKAAQA GANDQQAATV EHRDEPIERT
GETAKPSESQ SASTDDTEGT EKADAAAAKK AKIAAAIAKA KAKKAQLDAG ASDEPDVMTP
AEDIEANSPE AIKKAKIAAA VAKAKAKKAQ QAGAGDEPKA EITTDAEPAK AEANDDAEAG
SPEAIKKAKI AAAVAKAKAK KAAQASAGDE QLAPSESQTD IEDFADAEDV ADTSSPEAIK
KAKIAAAVAK AKAKKLAKAE AETPNNEHKD
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