| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2065 |
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| Symbol | |
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| ID | 4921190 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2386115 |
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| End bp | 2388043 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163647 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001094190 |
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| Protein GI | 127512993 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000551747 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCGTTG GAAAATCTAT ACATCTATTG CTGATAACGG CTTGTCTTGC CTTGACGGCG
CTGGCCTATC TCAACCAGCG ACAAGAGATC GCCGCAATAG CCGACTTCCA ACTCAAGGAA
TATCAGGCCG ATCCCATCTG GCAACAGCCC CTACCCGAGC AAGGCCAAGC ACTCTTTACG
TTGCTGACTA AGCAATACGA GTTTCAGTTC TTCCAATATG TGCACCAATT AGACGGCAAC
CTCAACTACA CCCAGGGCGA ACTTATCGCC TCAGGTACGG ATCTGGCCAC AGTGCTCTTT
AATCAGCCAA GGGAAAACAC CCAAGCACTG CCCCAAGGCC GCCTGCAGGT GAAACTCTCC
AGCCGCACCA TAGCCAAAGA TGCACTGACT CATTTTACCC AAACTCTTAT CTGGATAGTC
GGTGGCTATC TGGCCCTGGC GGTACTCTTT ACCCTCTTGA TGGCCAGACA GAAGCGGACC
ATAGGCTATG CGGTCAATGC CCTGGACGGT TTCGCCGAGC TTAAATTTGA TGCCATCGCC
CATTCACGTT TTCACGGCGA ACTCAAACCC TTAGGCAAGG CACTGGAGCA TTGCCGCGTC
GCCCTGCATG ACAAGTTCGA TCAGCTGCAG CAACAGACAG AGCAGCTTAA TCGTGAGGCC
TATCAAGATC CTGTCACCCT ATTTGGCACC CGCCCCAAGT TTACCGAGAA GCTCGACGCC
CTCGCCAAGC CCGGCAAGTC GCGCATCGGA TTGATGGCGA TGATCAAGGC CACCGAACTG
GGCCATGTTA ACCAGAGCCA GGGCCGCGCG GCGGGCGATG ACTACCTGGC AGGCGTCGCC
ACCTGCATCC GCAAGGCGCT GCAGGGAATG CCCAATATCG AGGCGTTTAG GATCAGTAGC
GCCGATTTTG CCGTCTTCAT ACCGGATCTG GTACTAAAGG ATGCCCAGCA GCCGCTGGAG
AAATTAAAAG CCCAGTTCGA TGAGTACCAG CAAGGCAGCG ATCTCGAATC GGTAGCCTAT
ATCGGCATGG TGCCCTATGA GCAAGGCGGC GACGCCCTGT CTCTGGTCTA TATTGCCGAT
GCCGCCGTCA GCATCGCCCA GACACTCGGC CCCAACAGCT ATCATGTGCA GGAGAAGCTC
AGCGACGAGG AACTGGTTGG CGATTCCCAT TGGAAACTGG CCATCGAAGA TATTATCAAG
CGCCGAGCCA TCAAGTTTCA CGCCCAGGAT ATTCAACCCT GTCGCGGCGC CGACAACGTC
TATCGCGAGC TGCTGTCGCG CTTCTATAGC AGCGAGGGCA AGTTTCTGCC CACTGGCACA
GTGATCGCCA TGGCCGAGCG TCATGGGCTC AGCGTAGAGC TGGATAAGAT CATCATACTC
AGCACCCTGC GCCTGTTGCT CGACACCCCA ACCTTCACCG GCGCCTTAGG GATCAACATC
AGTACCGCCT CGGTCAACCA GCCCGCCTTT ACCGCCTGGC TGAAAGATAT CTTCGTGCGT
CAGCGCCAGA TCGCCTCGCG CCTGGTGTTG GAGGTGAATG AGGCGGGAAT GCAGGCCAAT
ATCCGCCAGG CCCATAAGTT TGTGCGCGAC ATGCACAGTG TCGGCGCACG GGTGGCGGTC
GAGCACTTTG GCATGGGGTT CACCTCCTTC AAGTTCTTTA AAGAGGTCAG GCCCGACTTT
ATTAAGCTAG ATGGCAGTTA CTCACAGGGA ATAGACACTG ATAGCAACAA TCGCTTCTTC
GTGAAGATGA TAGTCGATGT GGCCCGTAAG CAATCGGTGA AGGTGATCGC CTCCAGTATC
GAGCGTCAGG AAGAGAAGTT TGCCCTGGAG CAGCTTTTAG TGGACGGCCT GCAAGGCTTT
TACATCGCTA AGCCTAAACC ATTCACCGTA AAGGATGAAC AATCTGCGCG CAGTCAGACG
GCGGGATAA
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| Protein sequence | MGVGKSIHLL LITACLALTA LAYLNQRQEI AAIADFQLKE YQADPIWQQP LPEQGQALFT
LLTKQYEFQF FQYVHQLDGN LNYTQGELIA SGTDLATVLF NQPRENTQAL PQGRLQVKLS
SRTIAKDALT HFTQTLIWIV GGYLALAVLF TLLMARQKRT IGYAVNALDG FAELKFDAIA
HSRFHGELKP LGKALEHCRV ALHDKFDQLQ QQTEQLNREA YQDPVTLFGT RPKFTEKLDA
LAKPGKSRIG LMAMIKATEL GHVNQSQGRA AGDDYLAGVA TCIRKALQGM PNIEAFRISS
ADFAVFIPDL VLKDAQQPLE KLKAQFDEYQ QGSDLESVAY IGMVPYEQGG DALSLVYIAD
AAVSIAQTLG PNSYHVQEKL SDEELVGDSH WKLAIEDIIK RRAIKFHAQD IQPCRGADNV
YRELLSRFYS SEGKFLPTGT VIAMAERHGL SVELDKIIIL STLRLLLDTP TFTGALGINI
STASVNQPAF TAWLKDIFVR QRQIASRLVL EVNEAGMQAN IRQAHKFVRD MHSVGARVAV
EHFGMGFTSF KFFKEVRPDF IKLDGSYSQG IDTDSNNRFF VKMIVDVARK QSVKVIASSI
ERQEEKFALE QLLVDGLQGF YIAKPKPFTV KDEQSARSQT AG
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