| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2064 |
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| Symbol | |
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| ID | 4923428 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2382840 |
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| End bp | 2384858 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640163642 |
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| Product | excinuclease ABC subunit B |
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| Protein accession | YP_001094189 |
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| Protein GI | 127512992 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
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| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0943348 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGTGAAT CAGCATTTGA TCTCGTTTCG CAATACGCCC CGGCTGGCGA TCAGCCTGGG
GCAATCAAGC AACTTGTCGA CGGCCTGGAT GCCGGGCTGG CAAACCAGAC ATTGCTTGGG
GTAACGGGAT CCGGCAAAAC CTTTACCATC GCCAATGTTA TCAAGCAGAT GCAGCGCCCA
ACTATCATCA TGGCGCCCAA CAAGACCCTG GCGGCCCAGC TCTATGGCGA GATGAAGGAG
TTCTTTCCTA ATAATGCCGT CGAGTATTTT GTCTCCTACT ACGACTATTA TCAGCCCGAG
GCCTATGTGC CGTCGACCAA TACCTTTATC GAGAAGGATG CCTCGGTCAA CGCTCATATC
GAACAGATGC GACTCTCTGC CACCAAGGCG TTGCTTGAGC GGCGCGATGT GGTGCTGATC
GCCTCTGTAT CGGCCATTTA TGGTTTGGGC GACCCTGAAT CCTACATGAA GATGTTGCTG
CATCTGCGTC AGGGCGATTT TATGGGCCAG AGGGAGATCC TGCAGCGCCT GAGCGAGCTG
CAATATACCC GTAACGATAT CGAGCTGGAT CGCGGTACCT TCAGGGTGCG CGGTGAGGTG
ATCGATATCT TCCCGGCCGA ATCTGACAAG CAGGCGATCC GTGTCGAACT GTTCGACGAT
GAAATTGACC GTCTCAGCCT GTTTGATCCC TTGACCGGCC ATATTCTGCA GCGCATCGCG
CGCACCACTG TCTATCCTAA GACCCACTAT GTGACGCCCA GAGAGAAGAT CCTGGCGGCT
ACAGAGGATA TCAAGCAGGA GCTCAGAGAG CGCAAGCAGT ATCTGCTGGA CAATAATAAG
CTTATCGAGG CGCAGCGGAT TTCTGAGCGG GTGCAATACG ATATTGAGAT GATGACAGAG
CTGGGGTACT GCTCCGGCAT CGAAAACTAT TCCCGCTATC TCTCTGGCAG ACGCCCGGGC
GAGGGGCCGC CGACCCTGCT GGACTATTTG CCAGCCGACG GCCTGTTGAT CCTCGACGAG
TCCCACGTAA CAGTGCCGCA GATCGGCGCC ATGTATAAGG GTGACCGTTC GCGCAAGATG
AATCTGGTGG AGTATGGTTT CCGTCTGCCC TCGGCGCTGG ATAACCGTCC GCTCAAGTTC
GAAGAGTTCG AATCCCTGAT GCCACAGACC ATCTTCGTGT CGGCAACCCC GGCGCAGTAT
GAGCTGGATA AGAGTGACGG GGAGATCGCC GAGCAGGTGG TGCGGCCGAC AGGCCTGCTG
GATCCCGAGA TAGAGGTGCG CCCGGTGGCA ATTCAGGTGG ACGATCTTCT GTCTGAAGCC
AACAAGCGCG TCGCGGTGAA CGAGCGGGTG TTGGTGACCA CGTTAACCAA ACGTATGGCG
GAAGATCTCA CCGAGTATCT CGATGAGCAT GGTGTCAAGG TTCGTTATCT GCACTCAGAC
ATAGATACGG TAGAGCGGGT GGAGATCATC CGCGACCTAC GCCTGGGTGT ATTTGATGTG
CTGGTCGGCA TCAACTTGCT CAGGGAGGGC CTGGATATGC CCGAGGTCTC CCTGGTGTGC
ATCTTAGATG CCGATAAGGA AGGCTTCCTG CGCTCAGAGC GCTCCCTCAT TCAGACCATA
GGTCGCGCCG CCCGAAACGT GAACGGCAAG GTGATCCTCT ACGCCGATAA TATGACTAAG
TCGATGGCCA AGGCGATCGG TGAGACTGAG CGTCGCAGGG AGAAACAGCG TGAGTTTAAC
CTGGCCAACG GCATCACACC AAAAGGGGTG TCGAAGAAGA TCGCCGACGT GATGGATCTG
GGTGACTATA ACGAGCATAC CGCCAAGGTG TTGCCGAAAT ACCAGAAGGT GGCGGAGTCC
AGAACTACCT ATGCCAAGCA AGACGCGTCC AGCCTCAGCC ATCAGATCGA TGAGCTGGAG
AAGCGTATGC ATCAGCATGC CAGGGATCTG GAGTTCGAAC AGGCGGCAGC GTTACGTGAT
GAAGTGCTGG CCCTGCGCGA GGCGCTGATT AAGGCTTAG
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| Protein sequence | MSESAFDLVS QYAPAGDQPG AIKQLVDGLD AGLANQTLLG VTGSGKTFTI ANVIKQMQRP
TIIMAPNKTL AAQLYGEMKE FFPNNAVEYF VSYYDYYQPE AYVPSTNTFI EKDASVNAHI
EQMRLSATKA LLERRDVVLI ASVSAIYGLG DPESYMKMLL HLRQGDFMGQ REILQRLSEL
QYTRNDIELD RGTFRVRGEV IDIFPAESDK QAIRVELFDD EIDRLSLFDP LTGHILQRIA
RTTVYPKTHY VTPREKILAA TEDIKQELRE RKQYLLDNNK LIEAQRISER VQYDIEMMTE
LGYCSGIENY SRYLSGRRPG EGPPTLLDYL PADGLLILDE SHVTVPQIGA MYKGDRSRKM
NLVEYGFRLP SALDNRPLKF EEFESLMPQT IFVSATPAQY ELDKSDGEIA EQVVRPTGLL
DPEIEVRPVA IQVDDLLSEA NKRVAVNERV LVTTLTKRMA EDLTEYLDEH GVKVRYLHSD
IDTVERVEII RDLRLGVFDV LVGINLLREG LDMPEVSLVC ILDADKEGFL RSERSLIQTI
GRAARNVNGK VILYADNMTK SMAKAIGETE RRREKQREFN LANGITPKGV SKKIADVMDL
GDYNEHTAKV LPKYQKVAES RTTYAKQDAS SLSHQIDELE KRMHQHARDL EFEQAAALRD
EVLALREALI KA
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