| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2063 |
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| Symbol | |
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| ID | 4923427 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2382129 |
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| End bp | 2382713 |
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| Gene Length | 585 bp |
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| Protein Length | 194 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640163641 |
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| Product | rhomboid family protein |
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| Protein accession | YP_001094188 |
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| Protein GI | 127512991 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAGGTC GGCTGACGTC GCGCGCTACG CCCTATGGCG TGGTGCTGGG GATCAGCATA
CTCTGCAGCC TGCTCTACTT TCTCCACCTT GACGGCACGC TCGCCTTTCG CCGCAGTGCC
ATCGCGCACG GAGAGTGGTG GCGCCTGGTT AGCGGCAATC TGCTGCACAC CAATCATTGG
CACCTGCTGA TGAATCTGGC GGGTCTGTGG GTGATCAGTT TTCTGCACGA GAACCACTAC
CGCGCCGGTA ATTTCACCCT GCTGTTTGCC TTGCTCTGTC TGCTACAGGG ACTGGGGCTC
TACTGGTTTT TCCCCATCTT AGGCGGTTAT GTAGGCCTCA GCGGCATGTT GCATGGTTTA
TTTGCCTACG GCGCCCTCAA AGATATTCAG ATGAAGATCC GCTCCGGCTA CCTGCTGTTT
GCCGGCGTCT GCTTTAAGGT GGCTTATGAG CAATATTACG GCGCCACGGA TCAGATCACT
AAGCTGATCG ATGCCAGGGT CGCCACCGAG GCGCATCTAG TAGGCGTGAT CAGCGGCGTG
CTGGTCTTTT TGCTCTATCG TCTCATCAGG CGACTGGCGC GCTAA
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| Protein sequence | MLGRLTSRAT PYGVVLGISI LCSLLYFLHL DGTLAFRRSA IAHGEWWRLV SGNLLHTNHW
HLLMNLAGLW VISFLHENHY RAGNFTLLFA LLCLLQGLGL YWFFPILGGY VGLSGMLHGL
FAYGALKDIQ MKIRSGYLLF AGVCFKVAYE QYYGATDQIT KLIDARVATE AHLVGVISGV
LVFLLYRLIR RLAR
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