| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2057 |
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| Symbol | |
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| ID | 4923741 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2375454 |
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| End bp | 2377643 |
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| Gene Length | 2190 bp |
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| Protein Length | 729 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163632 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001094182 |
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| Protein GI | 127512985 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.447802 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAGC GACAATTTCA ACATCTGCTT GAAACGATAG TCAATTCGAC GCAAAAACAA
GAAGGCCAGT TTAAAGAGAC GGCCGAGCTT GCCTGTGATC TGCTCAGTCA ATCCCTGAAG
GTCGACAACA TAGGTGTTTG CCTGTTTTCC GGTTGCGAGA CCAGTGAGCT CATAGCTCTT
TCGGGTTCTC AAAGCCAAGC TTCATTTAAT CAGTCTTCTC TGAATCATGC TTCGCGTCCC
GCACAGGGTC TCTGTCCTAA CTATTTCGAA CAACTCAAAC GCGGTCGTAT CATAGATGTG
ATCGACGTGG AGCAGGACTG CCGCGTCGCC GAGATTCGTG AGCATCTGAC GGCCAACGCT
GTGGTGTCCC ATCTCGATGT GGCGATTCGG ATCAATGGCC ATCTTGAAGG TGTGCTCTAT
CTCGAATCTT TGCATCCCCA TGAATGGCCG GAAAGCGAAA TCCATATCGT CTCTCAAGTC
GCCGATCAGC TGGCGTTGAC CCTGGCCACC CAGAGAGCCT ACGACACAGA CGAACGCCTG
AGTCTGTTCT TGAAGGCGAT AGAGCAGTCT GAACAGATCA GTATGGTAGT CAATCTGGCC
ACGGATAAGA TTGAATACGT CAACGGCGCC CATCACGCTA TCTCTGGGGT GCCTAAGCAG
CAGATCTTAG GCAAATCGCT AGCTTGTCTG GATTTCTTTA AGCAATCGCC GGTGCAGGCC
GATGCGGTAC TGGCCCAAGT TAAGCAAGGC AAGATCACCA AGGGAAACAC CCAGTTGACC
CGTCGCGACG GCGAGAGCTA CTGGCTGCGC TATCGGGTGC GTCCCTTCAC CACGCCAAGG
GGCAACCATT ACGCCTTGGT GACCGCCGAA GATTGCTCGG AAGAGCTGGT GCAGCAGAAT
GAACTCGAGC GTCTAGCCTG GCGCTGTTCG CTGACGGGCC TCTATAATCG CAGCTATTTC
AATCGCGCCT TGGAAAAACT CCGTAGCGGC CACCTGATGT TGATCGATCT CAGAGGCTTT
AAGCGCTTCA ACGATACCTA TGGTCACGAG AAGGGCGATA GCCTGTTGAT CGAGGTGGCG
CGTCGTATCA AACATTTCGC CAGCGTCAAG AAGGCGGAGC TGATGGCCCG TGTGGGCAGC
GATGAGTTTG CCCTGGTGCT ACAAGGAGTA GAGGATGAGC AGAGCCTGGA TTATGCCATC
AAGCGCCTCT ATCATCAGCT GAGCCTGCCT GTGCAGGTGG GCGCCGAATC ATTTGAGGCT
AAACCTGCAC TCTCTGTGGT CGAAATCGAT GCCCTGGAGG CAGGGTTCTC TGCGCTTACC
TGCGCCGATA TCGCAGTGCA ATATGCCAAG AAGAAGCAGG GCAGCGCGAT ACAGATCTTC
AACCATGCCC TGTTAAACAC CTTCAAAGAG GATGCACAGA TCGAGCGGGA TCTGCAGGCG
GCGCTGAAGA ATCGTGAGTT TGAGCTATAT TATCAGCCGC TTAAAGATCT CGGCCGACAG
GCCTATATCG GCGCTGAGGC CTTGATCCGT TGGCACCACC CCAAGAAGGG GGTGCTCTAT
CCAGGCGCCT TTATCGATAT CGCCGAACAA ACCGGCATGA TCGCCGCCAT AGGCGAATGG
GTGTTAGAGG CCGCCTGCCG TCAGCTCAAC CTGTGGCAGC ATCATAACAT CAACATCTCT
ATGCATGTGA ATGTATCGGC GCGGCAGTTT TTCAGTACTC AGCTCTACGA TCAGGTGTGG
CAGCTGGTTA CCCGTTACCG TATTCGCCCT AATACCCTGA TCTTAGAGAT CACCGAGACC
GAGCTGATGG AAGATGTGGT CTATGCGACG CATCTTTGCA AGGAGCTGGC CGAGCTAGGG
GTGGGGCTGG CGATCGACGA TTTCGGCACG GGTTACAGCT CGATGCGTTA TCTCAAGCAG
TTCCCCATCT CTAAGCTTAA GATAGACAGA TCCTTCATCT CAGATCTGAG TGTCAGCCGT
GAGAGCCGCG AGATCGTCAG CGCCATCATC GCCATGGCTA AGGCGCTTAA TCTGTCGTTG
ACGGCCGAAG GGGTCGAGAC CGCAGAGCAG GAATCTTTCC TATCGGCATT GAGCTGTCAT
CAGGCCCAAG GTTTCCTCTA CAGCCCAGCC CTTAGAGAGG CCGAATTCAG CCAGTTCCTG
CGAGCCAATG CCGAGACGCC GCTACACTGA
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| Protein sequence | MTKRQFQHLL ETIVNSTQKQ EGQFKETAEL ACDLLSQSLK VDNIGVCLFS GCETSELIAL
SGSQSQASFN QSSLNHASRP AQGLCPNYFE QLKRGRIIDV IDVEQDCRVA EIREHLTANA
VVSHLDVAIR INGHLEGVLY LESLHPHEWP ESEIHIVSQV ADQLALTLAT QRAYDTDERL
SLFLKAIEQS EQISMVVNLA TDKIEYVNGA HHAISGVPKQ QILGKSLACL DFFKQSPVQA
DAVLAQVKQG KITKGNTQLT RRDGESYWLR YRVRPFTTPR GNHYALVTAE DCSEELVQQN
ELERLAWRCS LTGLYNRSYF NRALEKLRSG HLMLIDLRGF KRFNDTYGHE KGDSLLIEVA
RRIKHFASVK KAELMARVGS DEFALVLQGV EDEQSLDYAI KRLYHQLSLP VQVGAESFEA
KPALSVVEID ALEAGFSALT CADIAVQYAK KKQGSAIQIF NHALLNTFKE DAQIERDLQA
ALKNREFELY YQPLKDLGRQ AYIGAEALIR WHHPKKGVLY PGAFIDIAEQ TGMIAAIGEW
VLEAACRQLN LWQHHNINIS MHVNVSARQF FSTQLYDQVW QLVTRYRIRP NTLILEITET
ELMEDVVYAT HLCKELAELG VGLAIDDFGT GYSSMRYLKQ FPISKLKIDR SFISDLSVSR
ESREIVSAII AMAKALNLSL TAEGVETAEQ ESFLSALSCH QAQGFLYSPA LREAEFSQFL
RANAETPLH
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