Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2056 |
Symbol | |
ID | 4923740 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2374851 |
End bp | 2375330 |
Gene Length | 480 bp |
Protein Length | 159 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640163631 |
Product | SecC motif-containing protein |
Protein accession | YP_001094181 |
Protein GI | 127512984 |
COG category | [S] Function unknown |
COG ID | [COG3012] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.22863 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTAACC CCTCCCTCCC ATGCCCCTGT GGCAGGTCGG TGAAAGATAA ACCCCTAAGC TACAACCAGT GTTGTGAACC TTTTCATCTC GGGGTCATTG CGCCGGATCC CGAATCCTTG ATGCGCAGCC GTTATTCGGC TTTCGTGCTC AAGTTGCACA AGTATCTGAT TGCGACCCAT CATCCCGATT ATCTGGACGG ACTGAGTGTC GAGATGCTCG ATGAAGAGAA TCATACGAGT TGGCTGGGGC TAAGCGTTAA TCGAAGCAGC AGCGCTCAAG ATGCGGGAAT GGTAGAGTTT CACGCCTGGT ACCAAGGTAG CAACGGACTG AACGCCATTC ATGAAATCTC AGACTTTGTG AAGCAAGATG GTCGCTGGTG GTACACCCAG GGCGAGCAAC TTGTGCCCAA ATACCCCAAA CGCAACGCTC CCTGTGTCTG CCAGAGCGGC AAGAAATTTA AGCAGTGCTG TCTTAAATAG
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Protein sequence | MINPSLPCPC GRSVKDKPLS YNQCCEPFHL GVIAPDPESL MRSRYSAFVL KLHKYLIATH HPDYLDGLSV EMLDEENHTS WLGLSVNRSS SAQDAGMVEF HAWYQGSNGL NAIHEISDFV KQDGRWWYTQ GEQLVPKYPK RNAPCVCQSG KKFKQCCLK
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