Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2052 |
Symbol | |
ID | 4923736 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 2370296 |
End bp | 2370934 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640163627 |
Product | TetR family transcriptional regulator |
Protein accession | YP_001094177 |
Protein GI | 127512980 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00634978 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.379689 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAATC GATCCGACAC GAAAACAAGA ATACTGGATG CGGCAGAAAA GCTATTCGCC GAGCGCGGCT TTTCAGAAAC CTCCTTGCGG CTGATCACCA GCAAGGCAGA GGTTAACCTC GCCTCGGTAA ACTATCATTT TGGCTCTAAG AAAGAGCTGA TCCGCGCCGT ACTCGCGCGC TATCTGGACC GTTTCATGCC AGAAGCCTCA GATGCCGTGG TGCAATTAAA ACAGGCTAGC GAACCTAGCC TGAATGAGAT CTTCTCGTCA TTGGTTAAAC CGCTCCTCGA GCTTAACAAG TTTAAGGCCG ATGGCACCCG CACCTTTTTG CAACTGTTGG GCCGTGGCTA CATCGAGAGT CAGGGGCACC TGAGATGGTT CATCACCACG CATTATGGTG AGCATCTGAG CGAGTTTGTG AAGGCGGTTG CCGAAAGCGC GCCACATATT CCCCCCGCAG AGATGTTTTG GCGATTACAC TTTACCTTAG GCACTGTGGT CTTCACCATG GCATCAGCTG ATGCCTTGAC CGAAATTGCC GAGGCAGATT TCAATGAGCA CAATGATATC GAAGCCGTGA TCCGCAAGGT CATTCCATAT CTGGCTGCCG GTGTGGCAGT GCCTGTGACA ACGCAGTAG
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Protein sequence | MANRSDTKTR ILDAAEKLFA ERGFSETSLR LITSKAEVNL ASVNYHFGSK KELIRAVLAR YLDRFMPEAS DAVVQLKQAS EPSLNEIFSS LVKPLLELNK FKADGTRTFL QLLGRGYIES QGHLRWFITT HYGEHLSEFV KAVAESAPHI PPAEMFWRLH FTLGTVVFTM ASADALTEIA EADFNEHNDI EAVIRKVIPY LAAGVAVPVT TQ
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