| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2051 |
|---|
| Symbol | |
|---|
| ID | 4923735 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2368011 |
|---|
| End bp | 2370287 |
|---|
| Gene Length | 2277 bp |
|---|
| Protein Length | 758 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640163626 |
|---|
| Product | acyl-CoA dehydrogenase |
|---|
| Protein accession | YP_001094176 |
|---|
| Protein GI | 127512979 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.217248 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.456304 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACTCT TTATCCTGGC ACTATTGGTC ATCATAGTGC TTTTTGGCGT GAAAAATATC
CGTATGCAGT GCATCACGCG GCCCGTATTC GCCTTCTTTA AGAAGGTGTT GCCTCCGCTC
TCCGATACCG AGAAAGAGGC GATGGAAGCC GGCGATGTTT GGTGGGAAGC CGAGCTATTT
CGTGGCAAGC CCAACTGGGA TACGCTGCAC AGCTACGGCC GTCCAAGGCT GACCGAAGAG
GAGAAAGCCT TTATCGATGA GCAGGTCATG ACGGCCCTGA CTATGATTGA TGACTTCAAC
ATAGTGCAGG AGCGTAAAGA TCTGCCGCCC GAGCTGTGGG ACTACTTCAA GAAAGAGGGC
TTCTTCGCCC TGATCATCCC CAAAGAGTAT GGCGGTAAGG CCTTCTCTGC CTATGCCAAT
TCAACCATCG TCAGCAAGCT TGCCAGTCGT AGCGTGAGCG CGGCGGTAAG TGTGATGGTG
CCAAACTCCT TAGGCCCTGG CGAACTGCTG ACCCACTATG GCACCAAGGA GCAACGCGAT
CACTGGCTGC CGAAACTGGC CAGTGGTGAA GCCGTGCCTT GTTTTGCCCT GACAGGCCCC
GAGGCGGGTT CAGATGCGGG CGCCATTCCC GATACCGGCA TAGTCTGCCG CGGTGAGTTC
CAGGGCGAAG AGGTGTTAGG CCTCAAGCTT AACTGGGACA AGCGTTATAT CACCCTGGCT
CCGGTATCGA CGGTATTGGG GCTGGCTTTC CAGATGCGTG ACCCTGAAGG CCTGCTTGGA
GACAAAGAAG AGATAGGGAT CACCTGTGCT CTGATCCCAA CGGATCATCC CGGCGTTGAG
ATAGGTAATC GTCACAACCC GCTTAACATG GGCTTCATGA ATGGTACGAC TCGCGGCGAG
GATGTCTTCA TTCCGCTGGA TTGGATCATT GGTGGGCCGC AATACGCGGG ACGGGGCTGG
CGCATGCTAG TCGAGTGTCT CTCGGCCGGT CGCGGCATCT CGCTGCCCGC CTTGGCGACG
GCTTCCGGTC ATGTCACCAC TAAGACCACG ACTGCTTACA GTTATGTACG CCATCAATTT
GGCTTGTCGC TCGGCCAGTT TGAAGGGGTG CAAGAGGCCC TGGCGCGTAT TATCGCCAAC
ACCTATCAGC TAGAGGCGGC GCGCCGTCTG ACTACCACGG GGATCGATCT TAAGGTCAAG
CCTTCTGTGG TTACCGCCAT CGCCAAGTAT CACATGACAG AGATGGGCCG GGATGTGCTC
AACGATGCCA TGGATATTCA ATCGGGCAAG GGGATCCAGC TTGGGCCTAA GAACTATCTA
GGTCATGGCT ATATGGCCAC GCCGATATCG ATCACGGTAG AAGGGGCGAA CATTCTTACC
CGCAGCCTGA TGATCTTCGG TCAGGGGGCG ACACGTTGTC ATCCTTACGT ACTGGCCGAG
ATGGAAGCCG CGGCCATGGA AGATACCGGC GAGGCGTTAG AGCGCTTCGA TAATCTGCTG
CTGGGTCACA TGGGCTATGC GGCACGTAAT GCCCTGAGTT CACTATGGGG CGCCTTAACC
GGCAGCCGAT TCAATTCGGC GCCCGTATCC GGCGAAACCA AACAGTACTA CAAGGATATG
ACTCGTCTGT CGGCAGCGCT CGCCTTCGTC ACCGATCTCT CCATGTTGGT GATGGGCGGC
GATCTCAAGC GCAAGGAGAT GTTGTCGGCG CGCCTTGGTG ATGTGCTCAG CGAACTCTAC
CTGGGCTCGG CCACCCTCAA GCTGTTCGAA GACAATGGCC GTCAGCAGGA CGACCTGCCG
ACCGTACACT ATGTGATGCA GCTTAGGTTG CAAAGGGCGG CTAAGGCGCT TTATGGCGCG
CTGCGTAACT TCCCCAATCG CCCACTGGCC TATGCGATGC GTGCCTTGGT GTTCCCTCTG
GGTAACCATT TCAATGGTCC GGACGACAAG CTCACCATTG CCGTGTGTCA GAGCATGCTC
AGACCCGGTC CGGCTCGCGA TAGGTTGACC CATCTGTGCC CAGATTTCGA AGGGGATAAT
GGCGGGATCG CCGAGGTGGA AGATGCGTTT ATCGCTCAGT ACAAGGCAAA GCATCTGTTT
AAGACGCTGC GCAATGCCCA GAAGGAAGGC AAGCTTGAGC GTAAACAGGC TAACGATGCC
CTGTATGCCC AAGCCTATGA GCTTAAGATC ATTACTGAGG CAGAGCACGA CACGCTACTC
GAGGCCGATA GGCTACGTAA GATAGCGATT GCTGTGGATG AGTTTGAAAG CCTCTAA
|
|---|
| Protein sequence | MTLFILALLV IIVLFGVKNI RMQCITRPVF AFFKKVLPPL SDTEKEAMEA GDVWWEAELF
RGKPNWDTLH SYGRPRLTEE EKAFIDEQVM TALTMIDDFN IVQERKDLPP ELWDYFKKEG
FFALIIPKEY GGKAFSAYAN STIVSKLASR SVSAAVSVMV PNSLGPGELL THYGTKEQRD
HWLPKLASGE AVPCFALTGP EAGSDAGAIP DTGIVCRGEF QGEEVLGLKL NWDKRYITLA
PVSTVLGLAF QMRDPEGLLG DKEEIGITCA LIPTDHPGVE IGNRHNPLNM GFMNGTTRGE
DVFIPLDWII GGPQYAGRGW RMLVECLSAG RGISLPALAT ASGHVTTKTT TAYSYVRHQF
GLSLGQFEGV QEALARIIAN TYQLEAARRL TTTGIDLKVK PSVVTAIAKY HMTEMGRDVL
NDAMDIQSGK GIQLGPKNYL GHGYMATPIS ITVEGANILT RSLMIFGQGA TRCHPYVLAE
MEAAAMEDTG EALERFDNLL LGHMGYAARN ALSSLWGALT GSRFNSAPVS GETKQYYKDM
TRLSAALAFV TDLSMLVMGG DLKRKEMLSA RLGDVLSELY LGSATLKLFE DNGRQQDDLP
TVHYVMQLRL QRAAKALYGA LRNFPNRPLA YAMRALVFPL GNHFNGPDDK LTIAVCQSML
RPGPARDRLT HLCPDFEGDN GGIAEVEDAF IAQYKAKHLF KTLRNAQKEG KLERKQANDA
LYAQAYELKI ITEAEHDTLL EADRLRKIAI AVDEFESL
|
|---|
| |