| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2046 |
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| Symbol | |
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| ID | 4923775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2361065 |
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| End bp | 2362891 |
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| Gene Length | 1827 bp |
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| Protein Length | 608 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163621 |
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| Product | phosphogluconate dehydratase |
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| Protein accession | YP_001094171 |
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| Protein GI | 127512974 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
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| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
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| TIGRFAM ID | [TIGR01196] 6-phosphogluconate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.26142 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATTCAG TAGTACAGTC AGTGACCGAC AGGATCATTG CCAGAAGCCA AGCGACTCGT
GCAAAGTATC TTGCGGCGCT GGGCGAAGCA AAAGCCAATG GCGTTCATCG CAGCAGCCTA
AGCTGTGGCA ACTTAGCCCA CGGTTTTGCC GCCTGTAGCC CGGCGGATAA GAATGCCATC
AAGGCATTTA ACAAAGCCAA CATAGGTATT GTCACCGCCT TCAACGATAT GTTATCGGCC
CATCAGCCAT ACGAGCACTA CCCTCAGCTG CTGAAAGACG CCTGTCACGA AGTTGGCAGT
GTTGCCCAGG TAGCAGCCGG TGTTCCAGCC ATGTGTGACG GTGTGACCCA AGGGCAACCC
GGCATGGAGC TCAGCCTGCT TAGCCGTGAG GTAATCGCCA TGTCAACGGC TGTGGGTCTG
TCTCACAACA TGTTTGACGG CGCCTTGCTA CTGGGGATCT GTGACAAGAT AGTTCCTGGT
CTGTTGATCG GCGCTCTGAG CTTCGGTCAT CTGCCTATGT TGTTTGTGCC AGCCGGCCCG
ATGAAATCCG GTATTCCTAA CAAGGAGAAG GCGCGGGTAC GTCAAAAGTT TGCCCAGGGG
CAGGTGGATC GCGCTGCGCT ATTGGAAGCT GAATCTAAGT CTTATCACAG TGCAGGCACC
TGTACCTTCT ATGGTACGGC AAACAGCAAC CAGCTGATGC TGGAGGTAAT GGGTCTGCAA
CTGCCAGGTT CCTCTTTCGT GAATCCTGAT GATCCGCTGC GTGAAGCCCT CAATAAGATG
GCGGCTAAGC AGGTGTGCCG TCTCACCGAG ATGGGTACCC AATACACGCC TATCGGTGAA
GTGGTTAACG AAAAATCTGT GGTCAATGGC ATAGTTGCCT TGCTGGCAAC GGGTGGCTCA
ACCAACCTGA CCATGCATAT CGTTGCCGCT GCCCGTGCTG CCGGCATTAT CGTCAACTGG
GATGATTTCT CTGAGCTGTC AGACGCCGTG CCGTTACTTG CTCGCGTCTA TCCTAACGGT
CACGCCGACA TCAACCACTT CCACGCAGCT GGCGGTATGG CCTTCCTGAT CAAGGAACTG
CTCGATGCCG GACTGCTGCA TGAAGATGTG TTGACGGTGG CCGGTCCTGG TCTGCGTCGT
TACACTCAGG AGCCACGCCT TATCGACAAT GAATTGGTTT GGGTCGAAGG CCCAAACGAA
TCTTTGGATA AAGAGGTACT GACGGCCGTG GCATCGCCAT TCCAGGCCAA CGGCGGATTA
AAACTGCTTA AGGGTAACCT GGGCCGCGCG GTGATCAAGG TTTCAGCGGT TGCAGAGTCG
CACCGATTCG TCGAGGCGCC TGCCGTGGTG ATCGACGATC AGAACAAACT CGAAGGCTTG
TTTAAGGCCG GAGAGCTCGA CAGAGACTGC GTGGTCGTGG TTAAAGGTCA GGGACCTAAG
GCGAACGGTA TGCCTGAGCT GCATAAATTG ACGCCTATTC TGGGCTCGCT ACAGGATAAA
GGCTTTAAGG TCGCGCTGCT GACCGATGGC CGTATGTCTG GTGCATCCGG TAAGGTGCCT
GCGGCGATCC ATTTGACGCC AGAGGCATTA GACGGTGGTC TGATCGCTAA AGTTGAAAAT
GGTGACCTGA TTCGTGTCGA TGCCAATACT GGTGAGGTGA GCCTGCTGGT CGATGAGGCT
GTACTGGCGA GTCGTGAAGT GGAAAAAGTC GATCTACGCA GTACCAGTTT CGGCATGGGC
CGCGAACTGT TTGCGGCGCT GCGTTCCAAT TTAAGTAGTC CAGAGACGGG TGCACGCTGC
ACCACGACCA TAGACGAAAA TTATTAA
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| Protein sequence | MHSVVQSVTD RIIARSQATR AKYLAALGEA KANGVHRSSL SCGNLAHGFA ACSPADKNAI
KAFNKANIGI VTAFNDMLSA HQPYEHYPQL LKDACHEVGS VAQVAAGVPA MCDGVTQGQP
GMELSLLSRE VIAMSTAVGL SHNMFDGALL LGICDKIVPG LLIGALSFGH LPMLFVPAGP
MKSGIPNKEK ARVRQKFAQG QVDRAALLEA ESKSYHSAGT CTFYGTANSN QLMLEVMGLQ
LPGSSFVNPD DPLREALNKM AAKQVCRLTE MGTQYTPIGE VVNEKSVVNG IVALLATGGS
TNLTMHIVAA ARAAGIIVNW DDFSELSDAV PLLARVYPNG HADINHFHAA GGMAFLIKEL
LDAGLLHEDV LTVAGPGLRR YTQEPRLIDN ELVWVEGPNE SLDKEVLTAV ASPFQANGGL
KLLKGNLGRA VIKVSAVAES HRFVEAPAVV IDDQNKLEGL FKAGELDRDC VVVVKGQGPK
ANGMPELHKL TPILGSLQDK GFKVALLTDG RMSGASGKVP AAIHLTPEAL DGGLIAKVEN
GDLIRVDANT GEVSLLVDEA VLASREVEKV DLRSTSFGMG RELFAALRSN LSSPETGARC
TTTIDENY
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