| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2042 |
|---|
| Symbol | |
|---|
| ID | 4923771 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2357797 |
|---|
| End bp | 2358210 |
|---|
| Gene Length | 414 bp |
|---|
| Protein Length | 137 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640163617 |
|---|
| Product | MarR family transcriptional regulator |
|---|
| Protein accession | YP_001094167 |
|---|
| Protein GI | 127512970 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1846] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0690708 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAATG ACCTATTGAG CCACACCATA GTCGAATTTT ATGAAAAGCT CTCGTCTTGG
GAGATGGCCG TAGTCAAGGA TGCTGGCCAC TCCTTGCCTC AGATCCATGC CGTAGAGATT
TTGGGCGGCA ATGGTGACAT GCGGATGAAA GAGTTGGCGG AGAAAATGGG GATCACCACA
GGTACTCTGA CGGTGCAGAT CGATAAGATG GAGCTGGCGG GTCTGGTGGC ACGCAAGGCC
CACCAGCAAG ACAGACGCTC GATTCTGGTT GGATTAACCG AGCAGGGGCA GGCTGTCTAC
CGGGAGCATG ACCAACTGCA CCATGGCTTG TCCGATCAAC TTACCGCTAA GTTCTCCGAC
AGCGAACGTG AGCTCTTGCT GAGTTTTTTT CAGCGCATGA ACAGCGAGTT TTAA
|
|---|
| Protein sequence | MNNDLLSHTI VEFYEKLSSW EMAVVKDAGH SLPQIHAVEI LGGNGDMRMK ELAEKMGITT
GTLTVQIDKM ELAGLVARKA HQQDRRSILV GLTEQGQAVY REHDQLHHGL SDQLTAKFSD
SERELLLSFF QRMNSEF
|
|---|
| |