Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2041 |
Symbol | |
ID | 4923770 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 2355602 |
End bp | 2357230 |
Gene Length | 1629 bp |
Protein Length | 542 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640163616 |
Product | hypothetical protein |
Protein accession | YP_001094166 |
Protein GI | 127512969 |
COG category | [R] General function prediction only |
COG ID | [COG2194] Predicted membrane-associated, metal-dependent hydrolase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.017573 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGCTGTCAC GCGTTAAAAC CCTTTCGGTG AATCAGTTTA CACTGATCAC CGCGTTATTT TATGTAGGCG TATTTAATAT TCCGCTGTTT CAGATCGTTC AGCAGGGTAT AGAGAAGCAG GGTGAGGTTA ACTACCTCTT CATTGCCACC ATTCCGCTAT TTCTTATCTT CGCGTTAAGC TTCATCTTCT CGCTTTTTTC GGTTAAGTAT CTGCTTAAGC CGTTTTTCAT CATCGTTACC CTGATCTCTT CCAGCGTGTT TTTCGCCGCG CTGCAATATG GCGTCGTGTT CGATTATGGC ATGATCGAAA ACACAGTGCA GACCAACAGC GCCGAGGCCT TAACCTATCT TAATTGGTCT TCAATCTTAA ACTTTACCCT GACCGGATTG CTGCCGGCCC TGCTGATCTT TAAGGCCGAT ATCGTCTACA AGCCTTTCGT CAAAGAGCTA CTGCATAAGC TTGCCTTCAT GTTCGCTATG CTTGCCGGTA TCGCGGTGAT CGGCTTCTTC TATTATCAAA ACTATGTCGC CTTTGGCCGT AACAACGATC AGATGAAGCG CTACATAGTC CCTACCTATG CCATCGGATC TATGATCAAG TATGTCAAGG TTAACTACTT CCAGGAACCG CTGGTCTATA AGGTGCAGGG CAAAGATGCC AAGAATCTGA CCCTAGATCA TAACGACAAG CCTAACTTGG TCGTGGTTGT GGTCGGCGAG ACCGCCAGGG CCCATAACTA TGAGTACTAT GGCTATGACA AGCCAACCAA CGCCCATACC AAGGCTTATG ACATGATCGC CTTTAAAGAT ACCGAGTCAT GCGGCACGGC AACGGCCGTG TCCCTGCCTT GTATGTTCTC GAGTATGGAT AGAGAAGATT ATGACGCGCG CAAGGCACAG GCCCAGGACA CCGCCATGGA CGTGCTGGAT CACGCCGGTA TCTCGCTGGA CTGGCTGGAT AATGACAGTG GCTGCAAGGG CGTGTGTGAC CGCGTTAAAC ACATCAACAT AGATCTCAAT AGCGACCCAG AGCTCTGCGA CGGTCACTAC TGCTACGATC AGGTGCTGCT GAATGAACTC GATAAGCGCC TTGCCGAAGG TGTCACCAAG GATACCCTTA TCGTGCTGCA CATCATAGGT TCACACGGCC CGACATACTA TTTGCGCTAT CCAGAAGCCC ACCGCAAGTT TGTGCCCGAT TGTCAGCGTA GCGACATCCA AAACTGCAGC GATGAAGAGC TGATGAATAC CTATGACAAC ACCATCTTGT ATTCCGACTA TATTATCGCT CAGGTGATCT CACGCCTTGA GGCGCAGCAG AACAAGGCCG ATACCGCCTT GCTCTATGTG TCCGACCACG GCGAGTCGCT GGGGGAGAGT GGCATGTACC TTCACGGCGC GCCTTATGCG ATAGCGCCGG ATGAGCAGAT CAAGATCCCT ATGCTGGCCT GGCTCTCAGC GGACTTCGCC TCCGACAATG GTTTAGACAA GCAGTGCCTG CGTGACCATG CCACCAAAGG TGGTTTCTCA CACGATAACC TCTTTTCCAG CCTGCTTGGT CTAATGAACG TATCGACCGA GGTGTATCGC AAGGAGAAGG ATCTGTTTGC GACTTGTCGG GTAAAATAG
|
Protein sequence | MLSRVKTLSV NQFTLITALF YVGVFNIPLF QIVQQGIEKQ GEVNYLFIAT IPLFLIFALS FIFSLFSVKY LLKPFFIIVT LISSSVFFAA LQYGVVFDYG MIENTVQTNS AEALTYLNWS SILNFTLTGL LPALLIFKAD IVYKPFVKEL LHKLAFMFAM LAGIAVIGFF YYQNYVAFGR NNDQMKRYIV PTYAIGSMIK YVKVNYFQEP LVYKVQGKDA KNLTLDHNDK PNLVVVVVGE TARAHNYEYY GYDKPTNAHT KAYDMIAFKD TESCGTATAV SLPCMFSSMD REDYDARKAQ AQDTAMDVLD HAGISLDWLD NDSGCKGVCD RVKHINIDLN SDPELCDGHY CYDQVLLNEL DKRLAEGVTK DTLIVLHIIG SHGPTYYLRY PEAHRKFVPD CQRSDIQNCS DEELMNTYDN TILYSDYIIA QVISRLEAQQ NKADTALLYV SDHGESLGES GMYLHGAPYA IAPDEQIKIP MLAWLSADFA SDNGLDKQCL RDHATKGGFS HDNLFSSLLG LMNVSTEVYR KEKDLFATCR VK
|
| |