| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2040 |
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| Symbol | |
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| ID | 4923769 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2354424 |
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| End bp | 2355467 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163615 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001094165 |
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| Protein GI | 127512968 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.405567 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0142229 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAAAA TCTCTATGAA TTTGGCTAAA CAACTTACCG AGACCGAACT TTCCGCTAAA
ATTCTCCGAC ATGCCGTTCC GCGCATGTCA GAACTCAATA TCCCAGTAAC CCCAGATAAT
TATGCCGTTT GGTATGAGTA TTTCCGTGGG GTCAATCTGG ATCTTAAGCG CGCCATCGAC
ACCCTGGTGG CCAGCCGCGC CCAGTTTACC GCCGAGGTCA ATGCCGGCCT CTATAACAGC
TTCATTCGCG AGCAGTCACC CGAGGTGATC GAGAATGTGC AGATAGAGAC GCAGATCTTG
ATCAATAATT TTATGACCCG TTTATCCGAG GTCACCGCAG GTACGGCGCA ATTTAACCTC
AGCCTGACCA CCTTTCAGCA GAATATCAGC CAGGACCCAG ACCCTAAGAC CCTCGAGCGC
CTGGTCGATA CCCTAGCCGA AGAGGTGTCT CAGGTGGTGA TCAGCAATCG CCAGATGGAA
GCGAATCTGA AGACGATGAA TCAGGAGGTC GCCGCGCTGA AGGCAGAGAT GGAAGATCTC
AATATCGCCG TGATGACAGA TCAGCTTACC TCGCTGCGTA ATCGCCGCGC CTTCGATGAG
GAGGTGCTGG GTCATATTCA AAGGTTCAGA AGAGAGCAGC GCCTTAGCAG CTTGCTGCTG
GTCGATATCG ATAACTTTAA GCAGTTTAAT GACACCCACG GTCACCTGGT GGGCGATAAG
GTACTCGCAT ATATCGCACT GGCGTTAAAG CAAGGGGTGA AGGGGGATGA CTTTGTCGCG
CGTTACGGCG GCGAAGAGTT CGTGATCCTG CTGCCGGATA CCGAGCATTC AGGCGCCATG
GTGGTGGCCG AGCAACTTAG GGCGCGCATC GCCGAGCGCC ATCTAAGCAT AGGCAAAGAT
AAGAAGCTCT CACTTGGGGC GATCACAGTC TCCATAGGGG TGGCGACACT GCGCCTTGAT
GATGACAGAG AGTCTTATCT GGTGCGCGCC GATGAGGCCC TATACAGAGC CAAGTCGGCA
GGCCGCAACT GTGTGAAGGG CTAA
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| Protein sequence | MAKISMNLAK QLTETELSAK ILRHAVPRMS ELNIPVTPDN YAVWYEYFRG VNLDLKRAID
TLVASRAQFT AEVNAGLYNS FIREQSPEVI ENVQIETQIL INNFMTRLSE VTAGTAQFNL
SLTTFQQNIS QDPDPKTLER LVDTLAEEVS QVVISNRQME ANLKTMNQEV AALKAEMEDL
NIAVMTDQLT SLRNRRAFDE EVLGHIQRFR REQRLSSLLL VDIDNFKQFN DTHGHLVGDK
VLAYIALALK QGVKGDDFVA RYGGEEFVIL LPDTEHSGAM VVAEQLRARI AERHLSIGKD
KKLSLGAITV SIGVATLRLD DDRESYLVRA DEALYRAKSA GRNCVKG
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