| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2037 |
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| Symbol | |
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| ID | 4923766 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2348979 |
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| End bp | 2350364 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163610 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_001094162 |
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| Protein GI | 127512965 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.01185 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00138183 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATCAAT TCGGCTTTCA AGCCAAAAAG CTCGTCCATC TCGCGTTGCC TGTGCTGATC
GCCCAGGTCA CCCAAACCAT GATGGGTTTT ATCGATACCG TCATGGCCGG ACGTGTCAGC
GCATTAGATA TGGCCGCGGT GGCCATCGGC GGCAGTCTGT GGCTGCCGGC GCTACTGTTT
GTACAGGGTT TGCTGGTCGC CTTTACCCCT GTGTTTGCCA GCCACCATGG CGCCGATAAT
CAAAATGCTA TCAGGCCGAT GGCTTTTCAG GCTGCCTATA TTGCCATAAT CGGCGCGGCC
GTAGTGATAA GCATTCTGCT TTTTGCGCCG CAGATCTTCA AATTAATGGA TTTGTCCCCC
GAGCTGGCCG AGCTGAGTGT CAGCTATCTC CATGGATTTG CCTGGGGCGT CCCCGCCTTC
GTGCTCTATC AGGTCTTGCG AGGATGTAGC GAGGGGATCT CCTACACACT ACCGACTATG
GTGATAGGGT TTGTCGGCTT GGCGGTAAAC ATCCCGGCCA ACTATATCTT CATCTATGGC
CACTTAGGTG CGCCCGCGCT GGGCGGTGCG GGCTGTGGTA TCGCAACGGC CCTGGTGTTC
TGGGCCATGT TTATCGCCAT GACCATTTAC ATGCAGTGGC ATAAGCGATT CGCCGTTATC
AAGCCTTTAG GTGCCTTCCA CCTGCCGGAT CTTAAGACCA TGAAGAGAAT GACCAAACAC
GGAATGCCCA TCGCCATGGC CTTGTTTTTC GAAGTGAGCC TGTTTGCCAT CATAGCGCTG
CTGCTCGCCC CGCTCGGCGC AGACGTTGTA GCCGGCCATC AGATCGCGCT TAACTTTTCG
TCCATAGTGT TTATGCTGCC ACTCTCTATC GGTATCGCCG TGTCGATACG GGTTGGATAC
TACCTCGGAC AATATAAGGC GGACGTGGCT AAGCTAGTGA CTAAGGTCGG TCTGGCTATC
GCCTTTAGCC TGGCGGCCTG CACGGCCGTC ATCACTGTGG TGTTTCGCAC TCAGATCGCG
CTGCTCTATA ACCAAAACCC CGAGGTGGTC GCCCTAGCGA GCAGCCTGAT GTTTCTGGCC
GCTCTATATC AGCTGTCTGA CTCGGTGCAG GTAGTTACTG CAGGTGCCCT GCGCGGCTAT
CACGACACCC GCAGCGCCTT CTACATTACC CTTGTCTCCT ATTGGGCCAT CGGCATGGTG
CTCGGCTATC TACTGGCAGA AACCGACATA CTGGTTCCTG CCATGGGCGC CCACGGTTTC
TGGATTGGCT TGATCGCCGG TCTCACCAGC GCCGCACTGC TGTTTGCCTT AAGGCTTCAG
TATATTCAAA AGCATCCAAA GCAATTGGCC TTGGTTGATC AGCCGATTAA TCACGCCGAC
CTATAG
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| Protein sequence | MNQFGFQAKK LVHLALPVLI AQVTQTMMGF IDTVMAGRVS ALDMAAVAIG GSLWLPALLF
VQGLLVAFTP VFASHHGADN QNAIRPMAFQ AAYIAIIGAA VVISILLFAP QIFKLMDLSP
ELAELSVSYL HGFAWGVPAF VLYQVLRGCS EGISYTLPTM VIGFVGLAVN IPANYIFIYG
HLGAPALGGA GCGIATALVF WAMFIAMTIY MQWHKRFAVI KPLGAFHLPD LKTMKRMTKH
GMPIAMALFF EVSLFAIIAL LLAPLGADVV AGHQIALNFS SIVFMLPLSI GIAVSIRVGY
YLGQYKADVA KLVTKVGLAI AFSLAACTAV ITVVFRTQIA LLYNQNPEVV ALASSLMFLA
ALYQLSDSVQ VVTAGALRGY HDTRSAFYIT LVSYWAIGMV LGYLLAETDI LVPAMGAHGF
WIGLIAGLTS AALLFALRLQ YIQKHPKQLA LVDQPINHAD L
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