Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2034 |
Symbol | |
ID | 4923763 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2347187 |
End bp | 2347933 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640163607 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001094159 |
Protein GI | 127512962 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0985311 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000033531 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACAATGA ACAAATGGGC ACTGGTAACC GGCGGCGCCA AACGTATTGG TGAAGCGATC GTATTAGCCT TGCACGGTAA AGGCTTCAAT ATACTGCTGC ACTATAAGGG ATCAGAAAGT GAAGCAATGG CGCTCGCAGG CAAGCTTAAC CTCAGCCGGG TAAACTCGTG CCAGACTGTG CAGGCCGACC TCGCCACCGA ACAAGGGCCC CTTAGCCTTA TCCAACACAT TAATGACCAT CAACTCCCGC TTGGGGCTCT TATCAATAAC GCCTCGCTGT TTGTACCAGA CAGCAGTATT GAAAACTGGC AATCTAGTCA GCAGCTGTTA AACCTTAATC TGCTCGCGCC CTATCTGTTA GCCACAAAGC TCAGTGAAAA CCTCGCCAGC AATGATGGCT GCGTCATTAA CCTGGTGGAT ATTCACGGCG ACCGCCCCTT AAAACGCCAT GGGCTATACT CAATATCTAA AGCAGGATTA AACATGGCGA CGCGGTCCCT GGCCCAAGAG TTAGCGCCTA AGGTTAGGGT CAACGGTATA TCGCCAGGCG CGATACTCTG GCCATCCCAG AGCGAACAAG CGGCTATCTC CAGCGTCACT CAGGCCATAC CTCTGGCGAG AGCTGGCAGC CCCGAGGATA TCGCCGATAC CGTGTGTTTT ATTCTGGAAA GCCCCTACCT TAATGGTCAG GTGATCGCTA TCGATGGCGG TCGCAGCGCA ACCGGATATA CAGGAGCCGA CGGATGA
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Protein sequence | MTMNKWALVT GGAKRIGEAI VLALHGKGFN ILLHYKGSES EAMALAGKLN LSRVNSCQTV QADLATEQGP LSLIQHINDH QLPLGALINN ASLFVPDSSI ENWQSSQQLL NLNLLAPYLL ATKLSENLAS NDGCVINLVD IHGDRPLKRH GLYSISKAGL NMATRSLAQE LAPKVRVNGI SPGAILWPSQ SEQAAISSVT QAIPLARAGS PEDIADTVCF ILESPYLNGQ VIAIDGGRSA TGYTGADG
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