Gene Shew_2034 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2034 
Symbol 
ID4923763 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2347187 
End bp2347933 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content53% 
IMG OID640163607 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001094159 
Protein GI127512962 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0985311 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000033531 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACAATGA ACAAATGGGC ACTGGTAACC GGCGGCGCCA AACGTATTGG TGAAGCGATC 
GTATTAGCCT TGCACGGTAA AGGCTTCAAT ATACTGCTGC ACTATAAGGG ATCAGAAAGT
GAAGCAATGG CGCTCGCAGG CAAGCTTAAC CTCAGCCGGG TAAACTCGTG CCAGACTGTG
CAGGCCGACC TCGCCACCGA ACAAGGGCCC CTTAGCCTTA TCCAACACAT TAATGACCAT
CAACTCCCGC TTGGGGCTCT TATCAATAAC GCCTCGCTGT TTGTACCAGA CAGCAGTATT
GAAAACTGGC AATCTAGTCA GCAGCTGTTA AACCTTAATC TGCTCGCGCC CTATCTGTTA
GCCACAAAGC TCAGTGAAAA CCTCGCCAGC AATGATGGCT GCGTCATTAA CCTGGTGGAT
ATTCACGGCG ACCGCCCCTT AAAACGCCAT GGGCTATACT CAATATCTAA AGCAGGATTA
AACATGGCGA CGCGGTCCCT GGCCCAAGAG TTAGCGCCTA AGGTTAGGGT CAACGGTATA
TCGCCAGGCG CGATACTCTG GCCATCCCAG AGCGAACAAG CGGCTATCTC CAGCGTCACT
CAGGCCATAC CTCTGGCGAG AGCTGGCAGC CCCGAGGATA TCGCCGATAC CGTGTGTTTT
ATTCTGGAAA GCCCCTACCT TAATGGTCAG GTGATCGCTA TCGATGGCGG TCGCAGCGCA
ACCGGATATA CAGGAGCCGA CGGATGA
 
Protein sequence
MTMNKWALVT GGAKRIGEAI VLALHGKGFN ILLHYKGSES EAMALAGKLN LSRVNSCQTV 
QADLATEQGP LSLIQHINDH QLPLGALINN ASLFVPDSSI ENWQSSQQLL NLNLLAPYLL
ATKLSENLAS NDGCVINLVD IHGDRPLKRH GLYSISKAGL NMATRSLAQE LAPKVRVNGI
SPGAILWPSQ SEQAAISSVT QAIPLARAGS PEDIADTVCF ILESPYLNGQ VIAIDGGRSA
TGYTGADG