| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2023 |
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| Symbol | |
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| ID | 4923862 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2335872 |
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| End bp | 2336498 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640163596 |
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| Product | outer membrane lipoprotein carrier protein LolA |
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| Protein accession | YP_001094148 |
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| Protein GI | 127512951 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2834] Outer membrane lipoprotein-sorting protein |
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| TIGRFAM ID | [TIGR00547] periplasmic chaperone LolA |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000244362 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000121623 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGCTAAAAC CCTTATCTCA ATTAGTCTGT GCCTTGCCTC TAGTCGTGGC GGCATCGAGT
TACGCCGATG ATTCGGCAGC CCTAAAGGAT AAGCTTGCCA AGCTGGATAA CCTTAAGGCC
AATTTTAGCC AGCAGGTAAC CGACGTTAAT AATAAGGTGA TCCAGCAGGG CACGGGTACC
TTCGCCTTGG CGGTACCTAA CCAGTTTTAT TGGCATCTGA CCCAGCCGGA TGAATCCCTG
ATTGTCGCCG ATGGCCGCGA CGTGTGGATC TACAATCCCT TTGCCGAAGA GGTGTCTGTG
TTGGATTTCA ATCAGGCTAT CAATGCCTCG CCGATCGCGC TCTTGGTACA TCGCGACGAC
GCGACCTGGC AGGCCTATCA GGTAAAGCGT CAGGACGATT GTTATCAGAT AACCCCTAAG
GCCGTCGATG CCAGCGTGAC CGGCGTTGAG GTCTGCTTTA AGGATGAGCA ACTCGAGGTG
ATGAAGCTGA CTGACCAGCA GGGTAACCTC AGTGTCTTCA ATCTGTCAGC CCAGGCGCCT
TTGAAAGACG CCGATGCTAG CCTGTTCCAG TTTACCGTTC CCGAAGGCGT CGATATTGAC
GATCAGCGCC TAAAGGCATT GGATTGA
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| Protein sequence | MLKPLSQLVC ALPLVVAASS YADDSAALKD KLAKLDNLKA NFSQQVTDVN NKVIQQGTGT
FALAVPNQFY WHLTQPDESL IVADGRDVWI YNPFAEEVSV LDFNQAINAS PIALLVHRDD
ATWQAYQVKR QDDCYQITPK AVDASVTGVE VCFKDEQLEV MKLTDQQGNL SVFNLSAQAP
LKDADASLFQ FTVPEGVDID DQRLKALD
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