Gene Shew_2015 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2015 
Symbol 
ID4924266 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2331189 
End bp2331578 
Gene Length390 bp 
Protein Length129 aa 
Translation table11 
GC content54% 
IMG OID640163588 
ProductDsrE family protein 
Protein accessionYP_001094140 
Protein GI127512943 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1553] Uncharacterized conserved protein involved in intracellular sulfur reduction 
TIGRFAM ID[TIGR03012] sulfur relay protein TusD/DsrE 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000123098 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00302042 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTAAGC TCATCATTCA AGTCAATCAG GCTGGTTACG GCCAGGGTAG CAGCTATCAG 
GCGCTGCAAT TTACTAAGGC GGCTATCGAT GCCGGCCATG AAGTGGTCAA AGTCTTCTTC
TATCAAGACG GTGTATTATC GACCAATCAT CTACAATCGC CCGCCTCCGA CGAGTTTGCC
CTTTACCAGG CCTGGCGTGA GCTGGGACAG ACACATCAAG TGCCCTTGGT AAACTGCGTA
TCGGCGGCGC TGCGCCGCGG CGTTTTATCT GCGGCCGAAT CGGCTGAAAA CCAGTTACAG
CATTGGAACC TCGAGCCCCC CTTTCAGATG GGCGGCCTTG GCGAACTCGT GACCGGTATA
GAGCAAGCCG ATCGCGTGAT CTGTTTTTAA
 
Protein sequence
MSKLIIQVNQ AGYGQGSSYQ ALQFTKAAID AGHEVVKVFF YQDGVLSTNH LQSPASDEFA 
LYQAWRELGQ THQVPLVNCV SAALRRGVLS AAESAENQLQ HWNLEPPFQM GGLGELVTGI
EQADRVICF