| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2012 |
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| Symbol | |
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| ID | 4921686 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2327793 |
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| End bp | 2329085 |
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| Gene Length | 1293 bp |
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| Protein Length | 430 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640163585 |
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| Product | inner membrane transport protein YdhC |
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| Protein accession | YP_001094137 |
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| Protein GI | 127512940 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000383533 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0277688 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAAAA TCGCTAAATT TTCTTTTCTT ATCTATCTAG CGCTACTTAG CATGTTGGGC
TTTATTGCGA CTGACATGTA TTTACCTGCT TTCAAAGCAA TTGAAACAAG TTTAGATGCC
AGTGCTACTC AGGTCGCAAG CTCGCTGACT TTCTTCCTCG CCGGTCTGGC CTTGGGTCAG
CTCTTGTATG GCCCCTTGGT ACAGGCCATA GGTAAACGTC TGAGTCTGGT ATTGGGTCTC
GTTCTGTTCG GCGCAGCCAG TCTGGTGATT GCCAATAGCG ACTCAATTGC CATGTTTAAT
GTGGCGCGTT TCTTCCAAGC ATTAGGTGCC TGTAGCGCTT CGGTGATCTG GCAGGCGATA
GTGATAGATC GTTATAAGGC CAGCGAGGCG CAGCAGGTAT TTAGTAACAT CATGCCGCTC
GTGGCCCTGT CGCCGGCCTT AGCGCCTATC CTGGGTGCCT ATCTGCTGGA GTGGCAGCAG
TGGCACAGCA TCTTCTTCAT CCTGGGCGGC TTAAGTTTGC TGCTTATCCT GGCGACCCTA
GCCTGGGTCG AAAGCAAGGA AAGCCTTAAT AGTAAGGCCG ACGAGGCAAT TAGCCAGCAA
GGCAGTACAG ACACACAAGT TCAAAAGAGT GTGCGCGTGA GCTATTTGGC CATGCTGGCC
AGCCCCAGAT ATCTGGGCAA CGTGCTGATA TTTGGGGCCT GCTCCGCGGC TTTCTTCTCT
TACCTAACCC TCTGGCCGAT AGTGATGGAG CAACATGGGT ATGAGGCTAA GGCGATCGGC
TTGAGTTTTA TTCCGCAGAC CGTGATGTTT ATTCTCGGGG GCTATCTGAG CAAGTTGTTT
ATTCGACGCT TAGGCGCCGA GGTGACGCTT ACCTGGGTCT TGTTGCTATT CGGTGCTTGT
GTTGCCGGTA TCGCCCTGGT CACCCTGTGT TACCCATCTA GCACTATCTG GCCTTTGTTG
AGTATCTTCT CTGTGATGGC GGCGGCCAAT GGCGCTTGTT ATCCCATAGT GGTTAACTCT
GCGCTGCAGG TGTTCAAGCA GGCATCGGCC AAGGCGGCGG GATTACAAAA CTTCCTGCAG
ATCAGTATCG CCTTTGGCGC ATCTTCACTT GTGGCGTTAT GGGCAAGTAG CGGCGAGAAG
GCAATTGGTG TCGGGATAGT CGTCAGCGCC ATAGGCGTGC TAATCGGTTT TCAGGTGAGA
GGTTACGACA AGTGGCGAGC CGTGTTCGGC GCCATATCTC CCCCGGATCC GGCGAAAATT
GCGCTGCATC AGGAGGAAGA TTCGACAAAG TGA
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| Protein sequence | MNKIAKFSFL IYLALLSMLG FIATDMYLPA FKAIETSLDA SATQVASSLT FFLAGLALGQ
LLYGPLVQAI GKRLSLVLGL VLFGAASLVI ANSDSIAMFN VARFFQALGA CSASVIWQAI
VIDRYKASEA QQVFSNIMPL VALSPALAPI LGAYLLEWQQ WHSIFFILGG LSLLLILATL
AWVESKESLN SKADEAISQQ GSTDTQVQKS VRVSYLAMLA SPRYLGNVLI FGACSAAFFS
YLTLWPIVME QHGYEAKAIG LSFIPQTVMF ILGGYLSKLF IRRLGAEVTL TWVLLLFGAC
VAGIALVTLC YPSSTIWPLL SIFSVMAAAN GACYPIVVNS ALQVFKQASA KAAGLQNFLQ
ISIAFGASSL VALWASSGEK AIGVGIVVSA IGVLIGFQVR GYDKWRAVFG AISPPDPAKI
ALHQEEDSTK
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