Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2007 |
Symbol | |
ID | 4924258 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2319294 |
End bp | 2320373 |
Gene Length | 1080 bp |
Protein Length | 359 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640163579 |
Product | hypothetical protein |
Protein accession | YP_001094132 |
Protein GI | 127512935 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.215237 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.122982 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGAATACAG ATTTCTCAAA ACCTGCGCTG GAAGACAAAC TCAACCGGAT CACTTCGATA CCACAAAGAT TCAACCAGGG CCTTAAGAAC CTGTGGCAAC GTCTCACTCT GCCACAAAGG CTCTACCTGC TGGCTGCGCT GCTGCTGATG AGCGAGCATT TAGGCTTAGT GGCCATCATT ACCACAATTG CCCTCGCCCT GGAGTTTTGG CCTCTGTTTG AGCGTGTCTG GCATTCGCTC GCCGGTAAGG CGGTATTGCT ACTCTTCTAT GCTATCGTGG CCAACTATGC CCTGGCAATG GCTGGTGCCA TTGTTAACGA GGTAGTGGGC GTACCGGCAA CGCATTTTAA CTACACCCAT AACTTTGCCA TCTTGCTGCT TCTGCCCGCC TGGATCCTGG GCATTAGCGC CATCGGACTA TTGTTTGTCC AGCTGTTGAT GCCTTTCTAT CTCATGATAG CCCTGATGTT AAAACCCGTT GGTATCAAGC TATTTTCCCT TACCGGCAAC AGTCATTACC GTTTCACCAC TTTGATGGTC AGATTCGTCC TCTCCTTGGT CTTGCTCTAC CATTTGATCT TGCTAATCGG TGATGTGGAG GAGAGAGTGG AATCGGCGCT AAACGATTTA AAGACCATTG AGGAATCGGT AAAGGGAGAG TCGAACAAAG GTCAAGACAA GCAGCTAACC GCAAACACAG ATGAGGTAGC CGCCAATTTA GAAATGAAGG CGCAACCCAG CGCTGAAGTG TCAGAGAAGG ATGAGGCGTT ATCAAACGCC GAAACTGCCC AAGAAAAGAC AGATGATCAA CAAACTCGCC AAGCAGAGAG CGAGGCATCG TTAGCGAAAG AATACGCCTC GCTACGTCAC GCCTATCAGG GTGAGATCCG CGAGTTAATC GCCGAGTTTG CCTACCGTCT CGAGGCCGAT AGCCGCTCTC GTTGTGAAAA GAGTGAGAAT GCCAACGTGG TCGAGCTCAA CGACTATGAA ATTCTCGAGG TGGTGCCAGA CAATACGGCA AAATACCGTT ATCGCTTTAC GGTAAGAAAA TGTATTTCAC CAGCCTTTCC GGCCAAATAG
|
Protein sequence | MNTDFSKPAL EDKLNRITSI PQRFNQGLKN LWQRLTLPQR LYLLAALLLM SEHLGLVAII TTIALALEFW PLFERVWHSL AGKAVLLLFY AIVANYALAM AGAIVNEVVG VPATHFNYTH NFAILLLLPA WILGISAIGL LFVQLLMPFY LMIALMLKPV GIKLFSLTGN SHYRFTTLMV RFVLSLVLLY HLILLIGDVE ERVESALNDL KTIEESVKGE SNKGQDKQLT ANTDEVAANL EMKAQPSAEV SEKDEALSNA ETAQEKTDDQ QTRQAESEAS LAKEYASLRH AYQGEIRELI AEFAYRLEAD SRSRCEKSEN ANVVELNDYE ILEVVPDNTA KYRYRFTVRK CISPAFPAK
|
| |