| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2002 |
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| Symbol | |
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| ID | 4920966 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2315161 |
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| End bp | 2316171 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640163574 |
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| Product | glyceraldehyde-3-phosphate dehydrogenase, type I |
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| Protein accession | YP_001094127 |
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| Protein GI | 127512930 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase |
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| TIGRFAM ID | [TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000463006 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.357314 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTATCC GCGTAGCAAT TAACGGCTAT GGCCGTATCG GTAGAAACGT ACTTCGCGCA
CTTTATGAAA GCGAAAAGCA GTACCCCATC CAAATCGTTG CCATCAACGA CCTGGGTGAT
GCTTCAATCA ACGCTCACCT GACTAAGTAC GACTCTGTAC ACGGTCGCTT CAACGCCAAA
GTTGAGCACG ACGACGAAGC TATCTACGTC AACGAAGACA AGATCAAAAC TTTCTCTGAA
CGTGACCCAG CTAAACTGCC TTGGGCCGAG CTTGAAGTCG ATGTTGTGTT CGAATGTACC
GGTATCTTCA CTTCTAAAGA AGCGGTTCAG CCACACCTAA ACGCTGGCGC GAAGAAAGTG
ATCATCTCTG CACCGGGTAA GAACGTTGAC GCGACTGTTG TTTACGGCGT AAACAACGAT
GTGATCACCT CTGACATGAC TGTGATCTCT AACGCTTCTT GTACCACCAA CTGTCTGGCG
CCTTTCGCTA AGCCGCTGAA CGACGAGATT GGTATCGAAT CGGGTCTGAT GACCACTATC
CACGCTTACA CTAACGACCA GCGTCTATCT GACGTTTATC ACACAGACCT ACGCCGCGCT
CGTGCCGCCG CTATGTCTAT GATCCCAACT AAGACTGGTG CTGCTGCAGC CGTTGGTCTA
GTGGTACCTG AGCTGGCTGG GAAGTTCGAC GGTATGGCAG TACGTGTACC TACAGTAAAC
GTATCTCTGG TGGATCTCTC TTTCGTTGCC GCGCGCGACA CCACAGTTGA AGAGATCAAC
GCCATCATCG AGAAGGCTGC AAGTGTTGCA CCTATGAGTG AAGTGCTGTC GGTAAACAAA
GAGCCATTGG TTTCTATCGA CTTCAACCAC AACCCATTCT CATCTAACTT CGATGCGACA
CAGACCCGTG TAAATGGTCG TCTGGTTAAA GTGATGGCGT GGTACGACAA CGAATGGGGC
TTCAGTAACC GTATGCTAGA CAACGCAGTC GCGCTGATGA CTGCTAAGTA A
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| Protein sequence | MTIRVAINGY GRIGRNVLRA LYESEKQYPI QIVAINDLGD ASINAHLTKY DSVHGRFNAK
VEHDDEAIYV NEDKIKTFSE RDPAKLPWAE LEVDVVFECT GIFTSKEAVQ PHLNAGAKKV
IISAPGKNVD ATVVYGVNND VITSDMTVIS NASCTTNCLA PFAKPLNDEI GIESGLMTTI
HAYTNDQRLS DVYHTDLRRA RAAAMSMIPT KTGAAAAVGL VVPELAGKFD GMAVRVPTVN
VSLVDLSFVA ARDTTVEEIN AIIEKAASVA PMSEVLSVNK EPLVSIDFNH NPFSSNFDAT
QTRVNGRLVK VMAWYDNEWG FSNRMLDNAV ALMTAK
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