| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1994 |
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| Symbol | |
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| ID | 4920958 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2305750 |
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| End bp | 2306682 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640163563 |
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| Product | universal stress protein UspE |
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| Protein accession | YP_001094119 |
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| Protein GI | 127512922 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.436901 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGGACT ATCATAAGAT CCTTGTTGTA GTGGATCCAA CAAGCGACAA GCAATCTGCC
CTCGCCAGAG CCGTCGAACT AGCCTCTAAA AACCAAGCGT CAATCACCGT TTTTCTCTCT
ATTTTCGATT TTTCCTACGA GATGACCTCT ATCCTGTCGG GTCATGAACG AGAAGCCATG
CGCCAAGGCG TGATTGCCCA GCGCAGAGCC TGGCTGGACG ATATCCTCGG CGGTTACAAA
GATAGCGGCG TTGCCATCGA CAGCGAAGTG ATTTGGCACA ATCGTCCCTT CGAGAGCATT
ATCTTACACG CCATCGAAGG TAGCTATGAT CTGATCGTTA AAGGCACACA CGAACACGAT
AAGCTTAAGT CGGTGATCTT TACCCCTACC GACTGGCACC TGATGCGTAA GGCGCCGGTG
CCTGTGCTCT TGGTGAAAGA ACATGACTGG CCGGTGGCCG GTAAGATCCT GTGCGCCATC
AACGTGGCCT CGGAAGATGA CGATCATCAA ACCCTTAACG GTAAGATCAT CGAGCATGCC
CTGGATCTGG CCAAGAAATT CGATGCTCAG GTACATCTGG TGAATGGTTA TCCTGGTACC
CCAGTTAACC TGGCTATTGA GTTGCCTGAC TTTGACGCGC ACACCTATAG CGAAACCATT
CGCATGCAGC ATGAGCAGCG TGTCTGTTAC CTTGCCAGCA ACTATGGTAT CTCCAGTGAC
TTTTGCCACA TCAAGGAAGG TCTGCCGGAG GATGTGATCC CTGAGCTTGC CGAGCAACTG
GATGCCGAGC TGGTGATCTT AGGTACCGTG GGTCGAACCG GCTTCTCGGC GGCGCTTATC
GGTAACACCG CCGAGCATGT GATCGATAGC ATCAACTGCG ACCTGTTGGC GATTAAGCCC
GACGGCTATA AGTCACCGTT AGAAGAGGAA TGA
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| Protein sequence | MKDYHKILVV VDPTSDKQSA LARAVELASK NQASITVFLS IFDFSYEMTS ILSGHEREAM
RQGVIAQRRA WLDDILGGYK DSGVAIDSEV IWHNRPFESI ILHAIEGSYD LIVKGTHEHD
KLKSVIFTPT DWHLMRKAPV PVLLVKEHDW PVAGKILCAI NVASEDDDHQ TLNGKIIEHA
LDLAKKFDAQ VHLVNGYPGT PVNLAIELPD FDAHTYSETI RMQHEQRVCY LASNYGISSD
FCHIKEGLPE DVIPELAEQL DAELVILGTV GRTGFSAALI GNTAEHVIDS INCDLLAIKP
DGYKSPLEEE
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