| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1986 |
|---|
| Symbol | |
|---|
| ID | 4921014 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2299200 |
|---|
| End bp | 2299805 |
|---|
| Gene Length | 606 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640163555 |
|---|
| Product | cbb3-type cytochrome c oxidase subunit II |
|---|
| Protein accession | YP_001094111 |
|---|
| Protein GI | 127512914 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2993] Cbb3-type cytochrome oxidase, cytochrome c subunit |
|---|
| TIGRFAM ID | [TIGR00781] cytochrome c oxidase, cbb3-type, subunit II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000734773 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTA ATCATGAGAT AGTCGAGAAA AACATCGGTC TGCTAGGTAT CTTTACCGTA
ATTGCTATCA GTATTGGTGG CCTGGTACAG ATCACTCCCC TGCTATTCCA AAAAGACACT
ACTGAGCCAG TAAACGGACT ACGTCCATAC TCAGCACTTG AGCTCGAAGG TCGTGACATC
TACATCCGTG AAGGTTGTGT AGGTTGTCAC AGCCAGATGA TTCGTCCGCT ACGTGCTGAA
ACTGAGCGTT ACGGTCACTA CTCTGTTGCC GGTGAATCAG TTTGGGATCA CCCATTCCTG
TGGGGTTCTA AGCGTACTGG TCCAGACTTG GCCCGTGTTG GCGGTCGTTA CAGCGACAAG
TGGCATGAAG TTCACCTACT TGATCCTCGC GCAGTAGTAC CACAATCAAA CATGCCTGCC
TTCCCTTGGT TGGCCGAGAA CGTCCTAGAT GGCGAGCTAA CGGCTAAGAA GATGGAAGTG
TTCCGTGGTT TCGGCGTGCC TTACTCTCAA GATGATATCG ACAACGCTAA GAAAGCGGTT
GAAGGTAAGA CTGAGATGCA GGCACTAATT GCATACCTGC AGTCGCTAGG TCACGCACTG
AAATAA
|
|---|
| Protein sequence | MKFNHEIVEK NIGLLGIFTV IAISIGGLVQ ITPLLFQKDT TEPVNGLRPY SALELEGRDI
YIREGCVGCH SQMIRPLRAE TERYGHYSVA GESVWDHPFL WGSKRTGPDL ARVGGRYSDK
WHEVHLLDPR AVVPQSNMPA FPWLAENVLD GELTAKKMEV FRGFGVPYSQ DDIDNAKKAV
EGKTEMQALI AYLQSLGHAL K
|
|---|
| |