| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1985 |
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| Symbol | |
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| ID | 4921013 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2297760 |
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| End bp | 2299187 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640163554 |
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| Product | cbb3-type cytochrome c oxidase subunit I |
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| Protein accession | YP_001094110 |
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| Protein GI | 127512913 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG3278] Cbb3-type cytochrome oxidase, subunit 1 |
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| TIGRFAM ID | [TIGR00780] cytochrome c oxidase, cbb3-type, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000279534 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAACC ATTCCCAGCC TCAAGGCGCT GATTACAATT ACACTGTTGT CCGCCAATTT
GCCCTCACCA CAGTTTTGTG GGGCATTATC GGTATGACAG TAGGTGTATT GATCGCGGCC
CAGTTAATCT GGCCACAACT TAACTTCGAA ACTCCATGGC TAACGTACAG TCGTCTAAGA
CCTCTGCACA CCAACGCCGT GATTTTCGCG TTTGGTACTT CAGCGTTATT TGCAACATCC
TATTATATCG TCCAGCGTAC CTGCCAAACC CGCCTATTTG CACCTAAATT AGCTGCATTT
ACCTTCTGGG GATGGCAAGC CATTATTCTT TCAGCCGTTA TTACTCTGCC GCTTGGTCTA
ACCAGCAGTA AAGAATACGC TGAACTTGAA TGGCCTATCG ACATCGCTAT TACCATAGTG
TGGGTAGCCT ATGCCGTTGT GTTCTTTGGC ACAATTGTGA AACGAACCAC GTCACACATC
TATGTGGCAA ACTGGTTCTT CGGCGCCTTC ATCATCACGG TTGCAGTTCT GCACATCGTG
AACTCTATGG CAGTACCTGT CAGCCTGTTC AAGTCATACT CATTATACTC TGGCGCCGTC
GATGCCATGG TGCAATGGTG GTATGGCCAC AACGCCGTTG GCTTCCTACT GACCGCCGGT
TTCCTGGGTA TGATGTACTA CTTCGTACCT AAGCAAGCAG GTCGTCCTGT TTATTCTTAC
CGTCTGTCTA TCGTTCACTT CTGGGCATTA ATTGCACTGT ACATCTGGGC GGGTCCACAC
CACCTGCACT ACACAGCGCT ACCAGACTGG ACACAGTCAC TGGGTATGGT GATGTCTCTG
ATCCTGTTCG CACCTTCTTG GGGCGGTATG ATCAACGGTA TCATGACCCT GTCAGGCGCT
TGGCATAAGC TAAGAACTGA CCCTGTTCTA CGTTTCTTGA TCGTTTCTCT GTCTTTCTAT
GGTATGTCGA CCTTCGAAGG TCCAATGATG GCCATTAAGA CAGTTAACGC ATTATCTCAC
TACACCGACT GGACCATAGG TCACGTTCAC TCAGGCGCAC TTGGCTGGGT GGCTATGGTA
TCTATCGGTT CGCTATACCA CCTGATCCCT GCTATCTACG GTCACGGTCG TATGTACAGC
ACACAACTGA TTAACGTTCA CTTCTGGTTA GCGACTATCG GTACTGTACT TTACATCGTT
TCAATGTGGA TCTCGGGTGT TATGCAAGGT CTGATGTGGC GTGCAGTTAA CTCTGACGGC
ACCCTAACCT ACAGCTTCGT TGAAGGTTTG GAAGCATCAT ACCCATTCTA CTTTGTTCGC
TTCTTAGGTG GCCTGTTCTT CGTCACTGGT ATGCTGCTAA TGGCATACAA CGTGGTTAAG
ACAGTAAAAG CGCCAAAAGA ATCTTTGCCA GCGCTGGCTG AAGCATAA
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| Protein sequence | MMNHSQPQGA DYNYTVVRQF ALTTVLWGII GMTVGVLIAA QLIWPQLNFE TPWLTYSRLR
PLHTNAVIFA FGTSALFATS YYIVQRTCQT RLFAPKLAAF TFWGWQAIIL SAVITLPLGL
TSSKEYAELE WPIDIAITIV WVAYAVVFFG TIVKRTTSHI YVANWFFGAF IITVAVLHIV
NSMAVPVSLF KSYSLYSGAV DAMVQWWYGH NAVGFLLTAG FLGMMYYFVP KQAGRPVYSY
RLSIVHFWAL IALYIWAGPH HLHYTALPDW TQSLGMVMSL ILFAPSWGGM INGIMTLSGA
WHKLRTDPVL RFLIVSLSFY GMSTFEGPMM AIKTVNALSH YTDWTIGHVH SGALGWVAMV
SIGSLYHLIP AIYGHGRMYS TQLINVHFWL ATIGTVLYIV SMWISGVMQG LMWRAVNSDG
TLTYSFVEGL EASYPFYFVR FLGGLFFVTG MLLMAYNVVK TVKAPKESLP ALAEA
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