| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1981 |
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| Symbol | |
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| ID | 4921009 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2291029 |
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| End bp | 2291928 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640163550 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_001094106 |
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| Protein GI | 127512909 |
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| COG category | [K] Transcription |
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| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAATCA CTAGCGGTAA CAGCATGATT CAGTCTCTAG CAGATACAGC ATTTGCTTAC
GGGAGAAGGG AAGGTGACCA TGACACTAGC ATCCCTGACC TGACGCTTCA CATCAGAAAC
ACCCCGACCG AGCCACTGCA CTGTATCTAT ACCTTGAGTC TGTCGCTTAT CTTGCAAGGC
AGTAAACAAG TCGCTATCGA CGACCGTTTG CGCATCTGTA GCGCAGGACA ATCTATGCTC
ACAACATTTG ATTTGCCAGT CATTTCACAT GTGACAGAAG CGACAAGGTA TCATCCGTTT
ATCGGCTTAG TCTTGAAGTT GGACTATGGA TTAATTGCCC AGACTTGCAC TGAACTTAAT
CTGGAAAGAC CATCCAAAGA TCTTAGATAT CAAGCAATTT CTACCCAAGA TATCGATACC
GGATTGTGTG ATGCGATGAG CCGTTTGCTG GGGTTACATC TCACGCCTGA ATATATCGAA
AGCCTGGCGC AACTGTATAA AAAGGAAATC GTTATTCGAT TGCTCCATGG TTCACATGGA
ATGCACTTGC GACATTTGGC GTCGGTTGGC TCGCCGAGCA GGCAAATCGT ACAGATAGTG
GCTTGGATGA AGCAGAATTT CGCTCAGGCG ATAGGCATCA ACGAATTAGC CGACAAAGCC
CATATGAGTG CATCAGCGTT TCGGCAACAC TTTAAAGCAT TGACGGGTAG CAGCCCATTG
CAATATCTCA AGCATCTGCG CCTGCAGGAA GCAAGGGACC AGATGCTGTT AAATGGTTTA
GATGCCAGCC AGGCAAGCGG AGTCGTTGGC TATGAAAGCC CATCTCAATT TAGCCGTGAA
TACAGTCGGC TATTTGGGCT TCCTCCACAA AAGGATATCC AGCGATTACG TCAGGCGTAA
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| Protein sequence | MLITSGNSMI QSLADTAFAY GRREGDHDTS IPDLTLHIRN TPTEPLHCIY TLSLSLILQG
SKQVAIDDRL RICSAGQSML TTFDLPVISH VTEATRYHPF IGLVLKLDYG LIAQTCTELN
LERPSKDLRY QAISTQDIDT GLCDAMSRLL GLHLTPEYIE SLAQLYKKEI VIRLLHGSHG
MHLRHLASVG SPSRQIVQIV AWMKQNFAQA IGINELADKA HMSASAFRQH FKALTGSSPL
QYLKHLRLQE ARDQMLLNGL DASQASGVVG YESPSQFSRE YSRLFGLPPQ KDIQRLRQA
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