Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1979 |
Symbol | |
ID | 4921007 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2289313 |
End bp | 2290248 |
Gene Length | 936 bp |
Protein Length | 311 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640163548 |
Product | putative dienelactone hydrolase-related enzyme |
Protein accession | YP_001094104 |
Protein GI | 127512907 |
COG category | [R] General function prediction only |
COG ID | [COG1073] Hydrolases of the alpha/beta superfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.559039 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACATCC AAAAAGTGAC ATTCAGAAAT GCAGATATGG CCTGGGATAT GGCGGCACTA ATTCTGTTGC CCGAAGGCTT TGACGAGTCA AAACGCTACC CAACTATGGT CAGTGTCCAT CCATTTGGTA GCTGTAAAGA GCAAACATCC AGTGCCGTGT ACGGTAAAGC GCTGGCTGAG CTGGGATACG TGGTGATCGC TTTTGACGCC AGTTTTCAGG GCGAATCTGG CGGATCACCT CGCTACGTCG AAGACCCAAG CCAACGGGTC GAAGACATCA GCCGTGTGAT CGACTATGCG GTTAGTTTAC CTTATGTCGA CGAAGACAGA ATCGGTGGTC TTGGTATCTG TGGTGGCGGC GCTTATATCT TCAGCTCCGC TCTAACAGAA AAGCGTTTGA AGGCGGTTGT TGGTATCACC CCTGTAAACT TGGGGCGTTT ATTCCGAGAA GGATTCAGCC AGTACAATCC AATCGGGGCT CTAGAAGCTA TGGCCACCCA GCGTACTGCT GAAGCGAGGG GGGCAGAGCT ACAGGTCAAT GAGCTTCTGC CGCCGAGTCC TGAGTTTGCA AAACAAAATG GAATGACCGA ACGCGATCTG TTCGAAGCCA CGGATTACTA TAAAACACCC AGAGGGCAGG CCGAGGGCGG GGCAACGCGT ATGTTGTTCT CTCATGCGCA AAAAACGCTG AGTTGGGATG CTTTTGCCTT TGTGGAAACC CTGATGACGC AGCCAATGAT GGCAGTTGTC GGTCAAAAAT TAGGTGCATT TGGCGCGTAT CGTGACGGAC ACGAGGTCTA TGGCCGCTCT ATTGTGTCAA AAGACCGCCA GTTGGTCGAA TTGCAAGATT GGTCCCACTA CGATCTGTAT GACCATCCGC AAGCGGTGAG TCTGGCAATG GAGAAAATTG GTCCTTTCCT GAGCCAACAC CTCTAA
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Protein sequence | MNIQKVTFRN ADMAWDMAAL ILLPEGFDES KRYPTMVSVH PFGSCKEQTS SAVYGKALAE LGYVVIAFDA SFQGESGGSP RYVEDPSQRV EDISRVIDYA VSLPYVDEDR IGGLGICGGG AYIFSSALTE KRLKAVVGIT PVNLGRLFRE GFSQYNPIGA LEAMATQRTA EARGAELQVN ELLPPSPEFA KQNGMTERDL FEATDYYKTP RGQAEGGATR MLFSHAQKTL SWDAFAFVET LMTQPMMAVV GQKLGAFGAY RDGHEVYGRS IVSKDRQLVE LQDWSHYDLY DHPQAVSLAM EKIGPFLSQH L
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