Gene Shew_1979 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1979 
Symbol 
ID4921007 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2289313 
End bp2290248 
Gene Length936 bp 
Protein Length311 aa 
Translation table11 
GC content51% 
IMG OID640163548 
Productputative dienelactone hydrolase-related enzyme 
Protein accessionYP_001094104 
Protein GI127512907 
COG category[R] General function prediction only 
COG ID[COG1073] Hydrolases of the alpha/beta superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.559039 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACATCC AAAAAGTGAC ATTCAGAAAT GCAGATATGG CCTGGGATAT GGCGGCACTA 
ATTCTGTTGC CCGAAGGCTT TGACGAGTCA AAACGCTACC CAACTATGGT CAGTGTCCAT
CCATTTGGTA GCTGTAAAGA GCAAACATCC AGTGCCGTGT ACGGTAAAGC GCTGGCTGAG
CTGGGATACG TGGTGATCGC TTTTGACGCC AGTTTTCAGG GCGAATCTGG CGGATCACCT
CGCTACGTCG AAGACCCAAG CCAACGGGTC GAAGACATCA GCCGTGTGAT CGACTATGCG
GTTAGTTTAC CTTATGTCGA CGAAGACAGA ATCGGTGGTC TTGGTATCTG TGGTGGCGGC
GCTTATATCT TCAGCTCCGC TCTAACAGAA AAGCGTTTGA AGGCGGTTGT TGGTATCACC
CCTGTAAACT TGGGGCGTTT ATTCCGAGAA GGATTCAGCC AGTACAATCC AATCGGGGCT
CTAGAAGCTA TGGCCACCCA GCGTACTGCT GAAGCGAGGG GGGCAGAGCT ACAGGTCAAT
GAGCTTCTGC CGCCGAGTCC TGAGTTTGCA AAACAAAATG GAATGACCGA ACGCGATCTG
TTCGAAGCCA CGGATTACTA TAAAACACCC AGAGGGCAGG CCGAGGGCGG GGCAACGCGT
ATGTTGTTCT CTCATGCGCA AAAAACGCTG AGTTGGGATG CTTTTGCCTT TGTGGAAACC
CTGATGACGC AGCCAATGAT GGCAGTTGTC GGTCAAAAAT TAGGTGCATT TGGCGCGTAT
CGTGACGGAC ACGAGGTCTA TGGCCGCTCT ATTGTGTCAA AAGACCGCCA GTTGGTCGAA
TTGCAAGATT GGTCCCACTA CGATCTGTAT GACCATCCGC AAGCGGTGAG TCTGGCAATG
GAGAAAATTG GTCCTTTCCT GAGCCAACAC CTCTAA
 
Protein sequence
MNIQKVTFRN ADMAWDMAAL ILLPEGFDES KRYPTMVSVH PFGSCKEQTS SAVYGKALAE 
LGYVVIAFDA SFQGESGGSP RYVEDPSQRV EDISRVIDYA VSLPYVDEDR IGGLGICGGG
AYIFSSALTE KRLKAVVGIT PVNLGRLFRE GFSQYNPIGA LEAMATQRTA EARGAELQVN
ELLPPSPEFA KQNGMTERDL FEATDYYKTP RGQAEGGATR MLFSHAQKTL SWDAFAFVET
LMTQPMMAVV GQKLGAFGAY RDGHEVYGRS IVSKDRQLVE LQDWSHYDLY DHPQAVSLAM
EKIGPFLSQH L