| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1977 |
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| Symbol | |
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| ID | 4921005 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2286966 |
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| End bp | 2287901 |
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| Gene Length | 936 bp |
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| Protein Length | 311 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640163546 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001094102 |
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| Protein GI | 127512905 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000486076 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCGTATG ATGCGCCCAA TCTACATCCA GATCTGCTCC AATGTCTGGC CAGTGACAGC
TATCTGTTGC AACTGACATT GGATACCTTG CCTGTGCCTA TCTTCTATAA AGATAAGGCA
GGCGTCTATC TGGGCTGCAA CAAGGCATTT GAATCCTTCA TTAAACTCAC CCGGGACGAA
TTAATTGGTA AGAGTGTCTA TGAGCTTTTC GACGAGGAGC TCGCCGAAGT CTACCAACGC
GCCGATCAGG CGTTATTCGA CAATCCTGGC GTGCAGATCT ATGAGAAACA GATAAAGACC
CGTGAAGGTG ACTCTGTCTT TGTGCGTTTT CATAAGACAA GTTTTAACGA CAATCGTGGT
GAGGTGGCAG GCCTAATTGG TGTGATATTC GATATCACTG AGTTAAAGGC GCTGGAAGCC
CAGCTGACAC ACCATGCCAT CTATGACGAT CTCACGCAGT TCTATAACCG CCGCGAGGGT
ATCGCCATTG GCGAGCGTCT GTATCACGCC TGTAGTCAGC AGCTGGGAGA ACTGGGCGTC
ATCCTTATCG ATGTCGATTA TTTCAAGTTG ATCAACGACA CCTACGGCCA CATGGTCGGC
GATGATGCGT TGCGCCATAT TGCCGCGACC TTAAAGCAAC AGCAGGATCC CGAAGATGTG
CTGATGCGTT GGGGCGGCGA AGAGTTTGTC GTCTTGGTTA ATCGCCCCTT TGGTACAGAC
CAAGACTTCG AGACATATCT CGAGGCCCGC GCTCAGGTCT ATTGTGACGC CATAAGAGAA
AATCGTTTTC AGATCGGTGA TGACGCGCTG CAGATCACTT TTAGCTGTGG CCTAAGCTCG
TTCGAGCCGG GTAAGAGCCT AACGCAGATG CTACACGATG CAGATGCTGC GCTTTATAGG
GCAAAGGATG CTGGTCGCGA TAATGTAAGT TGGTAG
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| Protein sequence | MPYDAPNLHP DLLQCLASDS YLLQLTLDTL PVPIFYKDKA GVYLGCNKAF ESFIKLTRDE
LIGKSVYELF DEELAEVYQR ADQALFDNPG VQIYEKQIKT REGDSVFVRF HKTSFNDNRG
EVAGLIGVIF DITELKALEA QLTHHAIYDD LTQFYNRREG IAIGERLYHA CSQQLGELGV
ILIDVDYFKL INDTYGHMVG DDALRHIAAT LKQQQDPEDV LMRWGGEEFV VLVNRPFGTD
QDFETYLEAR AQVYCDAIRE NRFQIGDDAL QITFSCGLSS FEPGKSLTQM LHDADAALYR
AKDAGRDNVS W
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