| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1962 |
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| Symbol | |
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| ID | 4921394 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2267440 |
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| End bp | 2269071 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640163531 |
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| Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
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| Protein accession | YP_001094087 |
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| Protein GI | 127512890 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.179042 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00577944 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTATACAA GATTGACTAG AGGGCTTACC GCCCTTCCCC TTAATTTCCC AAGCTTGCTG
ACTAAGGCGA TTCCGGCTGC CAAGCCTTTC GCCTTGTCTC TAGCTATTGC GGCTTCCTTA
ATACCTGCAG CAAGCAATGC CAGAGCCGAC GCTAATACCA ATACCAATTC CAATTCCAAT
ACCAAGCAGC TTGATAGCAA GGGTTATGAT AATCAAAGCT ATTATGACAA CCTCTTGTCG
GTGATCGCGC CGCCTCACTC GCAACTGTCT ATTTTTGCCC AGGATCTCTC CAATAATGAG
ATACTGTATC AGCACAACGC CGATACCCTA GTGCTGCCTG CCAGTACGCA AAAATTACTC
ACGGCCGTCG CCGCTATGCG GGTATTGGGT GAAGAGTTCA GCTTTGCGAC CCAATTCTCA
ACCAAAGGGC GCTTGTCTCA CGGTGTGTTG ACGGGCGATC TCTATCTTTC CTTTAGTGGC
GACCCCACCT TAACCACAGA CGATCTACGA GCTATGTTAA AGAGCTTGAA AGATGCTGGC
ATTCATACCG TTAAAGGGAA CCTCTTGCTC GTGGGGCAAG CCAAGGAGCA GACGCGCGCC
CCTGGCTGGG TGTGGGACGA TCTTGGGATT TGCTACGCCG CGCCGGTTTC CAGCTTTATC
GTCAATCAAA ATTGCGTCAA GGGCCAGTTA AAGCCAAAGC TTGCAAGCAG CGCCAGCCAA
CTCAACTTTC CGCGATATCT GCCCATCAAG GTGTCGACAA CCGCGGTATT TGATAAGACG
CAGCAAGAGC CCTTCTGTGA ACTCAACTTA GCTAGGCTGC CGGATAATCA TTACCACATC
AGTGGCTGTT ATCCGGGTGA TAAGCCGCTT AATCTAGCTA TCGCCGTGGA TGACCCAGCG
CTCTACGCCA AAGAGATGCT AACGCGCATG TTAAAGAGCG CCCACATCAA AATGAGCGGA
CAAGTGGCTA TTGCACACAG AACGCCGATT GGCCTTAAGC CCTTAGTGAC CCACAAATCG
GAAGGACTCG AGGCGCTCCT TCGTACCATG CTGCTCGATT CAGATAACTT GATTGCCGAT
AGCCTGTTTA AAGCCGTAGG CGCTCACTAT TACAAGGTGG CAGAAAACTT TCATGCAGGT
GCCAGGGCCG TTAAGGCGAT ACTCGAGGCG GACGGGATAG ATCTCAGCCA CTCGCAGATC
ATCGATGGCT CGGGCCTTTC TCGCTATAAC CTTATCTCGG CCCGGCAACT GGCCGAGGTC
CTGGGCCTGA TGGCGAAGGA TGAAAAATTA CGCCCCCTCA TTGAGCTGCT GCCGGTCGCC
GGGGTTAGCG GTACCCTCAA CTATAAGCGC GGCTTTCATC AAGCTCCCTT GATGAATAAG
GTCTCGGCCA AGACGGGATC GATGCAGGGC GTCGATAACT TGGCAGGTTA CCTTTCACTC
GACGCAAGTC ACCAAATACT CTTCGTGGTC ATGGAAAATG GCCAGAGCCA GAAGAGTAAG
AAACAAAGCC CTGCGCCCTT TAGCGCCCTC TTCCTGCAAA GCCTGCTGGA TAATCAAGGG
CAGATAGTCA AAAGCCAAGG CAATGAGGAC GTGGATAAGA AGAACAACCC AAAAACGCTC
AGTGCGCAAT AA
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| Protein sequence | MYTRLTRGLT ALPLNFPSLL TKAIPAAKPF ALSLAIAASL IPAASNARAD ANTNTNSNSN
TKQLDSKGYD NQSYYDNLLS VIAPPHSQLS IFAQDLSNNE ILYQHNADTL VLPASTQKLL
TAVAAMRVLG EEFSFATQFS TKGRLSHGVL TGDLYLSFSG DPTLTTDDLR AMLKSLKDAG
IHTVKGNLLL VGQAKEQTRA PGWVWDDLGI CYAAPVSSFI VNQNCVKGQL KPKLASSASQ
LNFPRYLPIK VSTTAVFDKT QQEPFCELNL ARLPDNHYHI SGCYPGDKPL NLAIAVDDPA
LYAKEMLTRM LKSAHIKMSG QVAIAHRTPI GLKPLVTHKS EGLEALLRTM LLDSDNLIAD
SLFKAVGAHY YKVAENFHAG ARAVKAILEA DGIDLSHSQI IDGSGLSRYN LISARQLAEV
LGLMAKDEKL RPLIELLPVA GVSGTLNYKR GFHQAPLMNK VSAKTGSMQG VDNLAGYLSL
DASHQILFVV MENGQSQKSK KQSPAPFSAL FLQSLLDNQG QIVKSQGNED VDKKNNPKTL
SAQ
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