| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1961 |
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| Symbol | |
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| ID | 4921393 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2265581 |
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| End bp | 2267332 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163530 |
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| Product | acyl-CoA dehydrogenase domain-containing protein |
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| Protein accession | YP_001094086 |
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| Protein GI | 127512889 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1960] Acyl-CoA dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000164987 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00189084 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATCCAT ACCAGGCGCC ATTGGCCGAC ATGAAATTTC TGTTGGAGCG CGTGTTCGAT
GCTCCACAAA CTTGGGGTGA ACTAGCGGCC TTGGCCGAGA CCGTCGATAT GGATACGGCA
ACGGCGATCC TCGATGAAGC AGAGAAGATC TCACGGGATC TTATCCATCC TATTAACCGT
CCCGGTGATG AGCAAGGCGT AAGCTTTGAA GATGCTAAGG TGATCACACC CGATGGCTAT
CGTGAGGTTT ATGACCAATA TGCCGAAGGC GGTTGGGTAG GGCTATGCGG CGATCCTGAG
TTTGGCGGCA TGGGCATGCC TAAGATGCTT GGCGTGCTAG TCGATGAGAT GGCCTATAGC
GCCTGTAACG CCTTTACCTT GTATGGTTCA CTCACCGCGG GTGCAGCCCT CTGTATCAAT
GCCCACGGCA GTGACGAGCT AAAAGAGAAG TACCTGCCTA ACCTCTATTC GGGTCAATGG
GCCGGCGCCA TGGACATGAC AGAGCCACAG GCGGGATCGG ATCTGCGTAA CATCCGCACC
AAGGCGATAC CGCAGGATGA TGGCAGCTAT CTTATCTCTG GCAGTAAGAT TTTCATTACT
GGCGGCGACC ATGACCTCAC CGAAAACGTT ATTCACCTGG TACTGGCAAA ACTGCCGGAC
TCGAACGGTA TCTCACTCTT CTTAGTGCCT AAGATCAAGG TAGATGATAA CGGTGAGCTG
GGCGAAACCA ACGGCGTTAC CGTAGGCTCA ATCGAGCACA AGATGGGGCT TAAGGGCTCG
GCGACCTGTG TGATGAACTT CGACGATGCT CAGGGTTATC TCATCGGTAA GGCGAACCGC
GGCTTAGTGT GCATGTTCAC CATGATGAAC TATGAGCGTC TGGCAATTGG TATTCAGGGC
CTAGGCACTT CTCAGGCGGC CTACCAGATG GCTAGCGACT ATGCCAAGGA GCGTCTGCAG
GGCCAGGCCG CAGGTGGCAG CGACAATGCC AGCGACCCTA TCTTGGTACA CGGTGACGTG
CGCCGCATGC TAATGACCAT ACGCTGTTAT ACCGAAGCGG GACGCGCGCT GTCGGTGTTT
ACCGGTCAGC AACTGGATCT CGCTAAACAC GCTGAGGGAG AGGTGCAGGA GAAGGCAGCG
CGTTATGTCG GCCTGCTGAC TCCGGTTGCC AAGGCGTTCT TGAGTGACAG AGGCCTGGAT
GCCGCCGTAA TGGCGCAGCA GGTGTTTGGT GGTCACGGCT ATATTCGCGA GACAGGTATC
GAGCAACTGG TTCGTGACAC CCGCATCGCG CAGATCTATG AGGGTACAAA CGGCATTCAA
GCCGTCGATT TCCTGGGTAG AAAGACCACA GGAGACGATC TGCGTACATT GACTGAATTT
GTTGGTGAGT GCCAGAGTCG GCTGGCAGCC ATGACCCATG TTACGGATGC GCAAAAGGCG
CTTATCACAT CGCGTTTCGA CGCCTTACTC GCAAGCGGTG AATATATCAA CGCCAATAAG
CTAAGCAATC CGGCCTTGAT CAACGCCTGC GCCGTCGATT TCCTCGATGC CTTTGGTCAT
CTGATCTATG GCTATTTCTG GTTACTGATG GCCGATAGGG CTGCCGATCA CCAAGATGCA
AGCTTTAGCA CGGCGAAACA ACAGCTGGCC GATTTCTATC TGGCCAAGCT ACTGCCTAAG
GTCGACTACC ATCTGGCGCA GGTCAACGCG GGTGATGCCA GCGTGATGGC GATGGCAGAA
GAGCTGTTTT AG
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| Protein sequence | MNPYQAPLAD MKFLLERVFD APQTWGELAA LAETVDMDTA TAILDEAEKI SRDLIHPINR
PGDEQGVSFE DAKVITPDGY REVYDQYAEG GWVGLCGDPE FGGMGMPKML GVLVDEMAYS
ACNAFTLYGS LTAGAALCIN AHGSDELKEK YLPNLYSGQW AGAMDMTEPQ AGSDLRNIRT
KAIPQDDGSY LISGSKIFIT GGDHDLTENV IHLVLAKLPD SNGISLFLVP KIKVDDNGEL
GETNGVTVGS IEHKMGLKGS ATCVMNFDDA QGYLIGKANR GLVCMFTMMN YERLAIGIQG
LGTSQAAYQM ASDYAKERLQ GQAAGGSDNA SDPILVHGDV RRMLMTIRCY TEAGRALSVF
TGQQLDLAKH AEGEVQEKAA RYVGLLTPVA KAFLSDRGLD AAVMAQQVFG GHGYIRETGI
EQLVRDTRIA QIYEGTNGIQ AVDFLGRKTT GDDLRTLTEF VGECQSRLAA MTHVTDAQKA
LITSRFDALL ASGEYINANK LSNPALINAC AVDFLDAFGH LIYGYFWLLM ADRAADHQDA
SFSTAKQQLA DFYLAKLLPK VDYHLAQVNA GDASVMAMAE ELF
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