| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1952 |
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| Symbol | |
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| ID | 4920985 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2257349 |
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| End bp | 2258629 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163521 |
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| Product | 3-phosphoshikimate 1-carboxyvinyltransferase |
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| Protein accession | YP_001094077 |
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| Protein GI | 127512880 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0128] 5-enolpyruvylshikimate-3-phosphate synthase |
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| TIGRFAM ID | [TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000690945 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000426447 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAACAAC TACGACTCAA TCCCATATCT AAGGTTCATG GTACCGTGAA TATTCCCGGT
TCTAAGAGTA TCTCTAACCG CGCTCTGTTA TTGGCGACCT TAGCTGAAGG GAAAACCCGA
CTGACCAATC TGCTCGATTC TGACGACATT CGTCACATGC TTACTGCCCT CAAGCAGCTC
GGGGTTAATT ATCAATTATC TGACAATAAC CGGGTTTGCG AAGTCGAGGG GCTGAGCGGC
GTGATTAATA GCGACACAGC CCAGACACTG TTTCTGGGTA ATGCCGGTAC GGCGATGCGC
CCCTTATGTG CTGCGCTGAC CTTAGGCAGC GGCGAATTTA CCTTAACGGG CGAGCCGCGA
ATGGAGGAGC GTCCCATAGG TGATCTGGTC GATGCCCTTA ACGCACTTGG CGCCGATATA
CGCTACCTGA AACAGCCTGG CTTTCCGCCA CTGACCATTA ATGCCACCGG ACTCAATGGC
GGCGATGTTG AGATCGCAGG CGACCTTTCC AGCCAGTTTT TAACCGCGCT GCTGATGGTA
ACGCCGCTTG CCAAGGCCCA GGTGAATATC AAGATTAAAG GCGAGCTGGT CTCCAAACCT
TATATCGACA TCACTATCGC GTTGATGGCG CAGTTTGGCG TGACCGTTAT CAATCACGAC
TATCAGCGCT TTGAGATCCC TGCAGGCCAG AAATATGTCT CCCCCGGCAC TGTGCTGGTT
GAAGGCGACG CCTCATCGGC CTCATACTTC CTGGCGGCGG GAGCCATTCA GGGCGGTGAG
GTTAAGGTCA CCGGCGTTGG ACTGAAAAGT ATTCAAGGGG ATGTTAAGTT TGCCGAGGTG
CTCGAAGCCA TGGGCGCACA GATAGAGTGG GGCGACGATT TTATCATCGC CAGAAGTGCG
CCGCTGCATG GGGTGGATCT CGACATGAAC CACATCCCGG ATGCTGCCAT GACCATAGCG
ACAGCGGCGC TGTTTGCCAC AGGCACCACG ACGCTGCGTA ATATCTATAA CTGGCGCATC
AAGGAGACGG ACCGTCTCGC TGCCATGGCC ACCGAACTGC GTAAAGTCGG CGCCGAGGTA
GAAGAGGGCC ATGATTATAT TCGCGTCACG GCGCCGGCTC AGTTAAATAC GGCCGATATC
GATACTTATA ACGATCATCG CATGGCCATG TGTTTCTCGC TGATGGCCTT TGCCGATTGT
GGCATTACCA TCAACGATCC TGATTGTACT TCCAAAACCT TCCCCGACTA CTTCGCCCAG
TTTGCGGCGC TTGCCCAGTA G
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| Protein sequence | MKQLRLNPIS KVHGTVNIPG SKSISNRALL LATLAEGKTR LTNLLDSDDI RHMLTALKQL
GVNYQLSDNN RVCEVEGLSG VINSDTAQTL FLGNAGTAMR PLCAALTLGS GEFTLTGEPR
MEERPIGDLV DALNALGADI RYLKQPGFPP LTINATGLNG GDVEIAGDLS SQFLTALLMV
TPLAKAQVNI KIKGELVSKP YIDITIALMA QFGVTVINHD YQRFEIPAGQ KYVSPGTVLV
EGDASSASYF LAAGAIQGGE VKVTGVGLKS IQGDVKFAEV LEAMGAQIEW GDDFIIARSA
PLHGVDLDMN HIPDAAMTIA TAALFATGTT TLRNIYNWRI KETDRLAAMA TELRKVGAEV
EEGHDYIRVT APAQLNTADI DTYNDHRMAM CFSLMAFADC GITINDPDCT SKTFPDYFAQ
FAALAQ
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