| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1949 |
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| Symbol | |
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| ID | 4920982 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2251792 |
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| End bp | 2254431 |
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| Gene Length | 2640 bp |
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| Protein Length | 879 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640163518 |
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| Product | DNA gyrase, A subunit |
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| Protein accession | YP_001094074 |
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| Protein GI | 127512877 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
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| TIGRFAM ID | [TIGR01063] DNA gyrase, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0708311 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00786865 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTGATC TGGCTTCATC TATAACACCA ATTAATATTG AAGACGAATT AAAGAATTCA
TATTTGGATT ACGCCATGAG CGTGATCGTC GGCCGTGCGT TACCCGATGT ACGTGACGGT
CTAAAGCCGG TTCATCGCCG CGTATTATTC GCGATGAACG AGTTGAAGAA CGATTGGAAC
AAACCTTATA AGAAGTCGGC GCGTGTCGTC GGTGACGTTA TCGGTAAATA TCACCCGCAC
GGTGACTCTG CGGTTTACGA CACCATCGTT CGTATGGCGC AGCCTTTCTC TATGCGCTAC
ACCCTTGTCG ATGGTCAGGG TAACTTTGGT TCGGTCGATG GCGACGCCGC GGCGGCCATG
CGTTATACCG AAATTCGTAT GGACAAGCTG GCGCATCAAC TGCTGGCTGA TCTAGAGAAA
GAAACCGTCG ATTATGTACC AAACTATGAT GGTACTGAGC AGATCCCAGC GGTATTGCCA
ACCCGTATTC CGGCCCTGCT GGTAAACGGC TCATCGGGCA TCGCCGTAGG TATGGCGACC
AACATTCCTC CTCACAACCT GTCAGAAGTG ATCTCCGGCT GTTTGGCGCT GATCGATGAG
CCAAGTCTCT CTATCGAGCA GTTGATGGAA CATATTCCAG GGCCAGACTT CCCAACGGCG
GCGATCGTCA ACGGCCGTAA AGGTATCGAA GATGCCTATA AGACGGGTCG TGGAAAGGCG
GTCATGCGTG CCCGCGCAAC CGTTGAGACT GAAGACAACG GTCGTGAGCG CATTATCGTT
ACCGAGATCC CGTATCAGGT AAACAAGGCG CGTCTGATCG AAAAGATCGC CGAGCTGGTA
AAAGATAAGA AGATCGAAGG CATCAGCGGC CTACGCGACG AGTCAGACAA AGACGGTATG
CGTATCGTTA TCGAAGTGAA GCGTGGCGAA GTGGGTGAGG TGATCCTCAA CAACCTCTAC
GCCCAGACGC AGCTGCAGAC CTCTTTCGGT ATCAACATGG TGGCCCTGAC CAATGGTCAG
CCTAAGTTGT TTAACCTTAA AGAGATGCTC GAGTGCTTCA TCCTTCACCG TCGTGAAGTG
GTGACCCGTC GTACCGTATT CGAACTGCGT AAGGCTCGCG AACGTGCTCA TATCCTTGAA
GCACTGGCGA TTGCACTGGC AAACATCGAT CCTATCATTG CGCTTATCAA GGCGTCACCA
ACCCCTGCCG AAGCCAAGAC TAAGCTGGTT TCTCAAGGCT GGGCCCTTGG CAATGTACAA
GGCATGCTGG AGAAGGCAGG TGATGATGCG GCGCGTCCAG AGTGGCTGTC GGCAGAATTC
GGTATTCGTG ATGGTCTCTA CTATCTGACT GAGCAACAGG CTCAGGCGAT TCTGGATCTG
CGTCTGCACA AGCTGACCGG TCTGGAACAT GAGAAGATCC TAAGCGAATA TGAAGAGCTC
CTAGAGCTGA TCGCAGCCCT GCTATATATC CTCCGCAGCC CTGAGCGTCT GATGGAAGTG
ATTAAAGAAG AGCTTCAGGA AGTGCTGGAA GTGTTTGGCG ATGAACGCCG CACCGAGCTT
AACGCCTCTG CGGTCGACAT TAGCCTTGAA GATCTGATCA ACGAAGAAGA TGTAGTCGTG
ACCCTGTCGC ATCTGGGTTA CGCCAAGTAT CAGCCTTTGA GCGATTACCA GGCCCAGCGC
CGTGGTGGTA AAGGTAAGGC CGCGACTAAG GTGAAAGATG AAGATTTCGT CGAGAAACTG
CTAGTTGCCA ACACCCACGA CACCATCTTG TGTTTCTCTG ACTTCGGTAA GATGTACTGG
CTCAAGGTGT ACCAACTGCC GCTGGCAAGC CGTCAGGCCC GTGGTCGTCC TATCATCAAC
CTGCTGCCGC TGGCGGAAGG TGAGCGCATT ACCGCTATCT TGCCGGTGCG TGAATATGAC
GCCGACAAGT ATGTGATCAT GGCGACCTCT CACGGCACCG TGAAGAAGAC CTCGCTGGAT
CAATACTCTC GTCCAAGAGC CAACGGTATC ATCGCCGTTA ACCTGAAAGA TGGCGATCAG
CTGATCGGCG TCGACATCAC CAACGGTGAC AACGAGGTGA TGCTCTTCTC CAACGAAGGT
AAGGTCGTTC GCTTTAGCGA AGATCAGGTT CGTGGCATGG GTCGTACCGC GACAGGTGTT
CGCGGTATCA AGCTCGAAGA TGGCCAGAGC GTGGTCTCGC TCATCGTACC TAAGAACGAC
GGTGCAATCC TGACCGTTAC CGAGAACGGT TATGGTAAGC GTACCGAGTT GGATGAATAC
CCAGCCAAGA GCCGCGCGAC CAAGGGTGTA GTCTCGATCA AGGTGAGCGA GCGTAACGGC
GCCGTCGTCG GAGCGGTACA AGTACTCGAA AACGACGAGA TCATGTTGAT CAGCGACAAG
GGTACCCTGG TTCGTACACC GGCATCTGGT GTATCGACTA TTGGTCGTAA CACTCAGGGT
GTGACCATTA TCCGTACGGC AACCGACGAG ACGGTAGTGG GACTGCAGCG TATCGATGAG
ATCCAGGATG AACAGGAGTT TGACGAAGAG GGCAACCCTA TCATCACGGA TACTGTCGAA
GAGCAACAAG TCGAAGGCGA AGCGCCCGAG GCTGAGCCAG ACGTTGAGCC AAATGAATAA
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| Protein sequence | MTDLASSITP INIEDELKNS YLDYAMSVIV GRALPDVRDG LKPVHRRVLF AMNELKNDWN
KPYKKSARVV GDVIGKYHPH GDSAVYDTIV RMAQPFSMRY TLVDGQGNFG SVDGDAAAAM
RYTEIRMDKL AHQLLADLEK ETVDYVPNYD GTEQIPAVLP TRIPALLVNG SSGIAVGMAT
NIPPHNLSEV ISGCLALIDE PSLSIEQLME HIPGPDFPTA AIVNGRKGIE DAYKTGRGKA
VMRARATVET EDNGRERIIV TEIPYQVNKA RLIEKIAELV KDKKIEGISG LRDESDKDGM
RIVIEVKRGE VGEVILNNLY AQTQLQTSFG INMVALTNGQ PKLFNLKEML ECFILHRREV
VTRRTVFELR KARERAHILE ALAIALANID PIIALIKASP TPAEAKTKLV SQGWALGNVQ
GMLEKAGDDA ARPEWLSAEF GIRDGLYYLT EQQAQAILDL RLHKLTGLEH EKILSEYEEL
LELIAALLYI LRSPERLMEV IKEELQEVLE VFGDERRTEL NASAVDISLE DLINEEDVVV
TLSHLGYAKY QPLSDYQAQR RGGKGKAATK VKDEDFVEKL LVANTHDTIL CFSDFGKMYW
LKVYQLPLAS RQARGRPIIN LLPLAEGERI TAILPVREYD ADKYVIMATS HGTVKKTSLD
QYSRPRANGI IAVNLKDGDQ LIGVDITNGD NEVMLFSNEG KVVRFSEDQV RGMGRTATGV
RGIKLEDGQS VVSLIVPKND GAILTVTENG YGKRTELDEY PAKSRATKGV VSIKVSERNG
AVVGAVQVLE NDEIMLISDK GTLVRTPASG VSTIGRNTQG VTIIRTATDE TVVGLQRIDE
IQDEQEFDEE GNPIITDTVE EQQVEGEAPE AEPDVEPNE
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