Gene Shew_1928 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1928 
Symbol 
ID4921256 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2226384 
End bp2227451 
Gene Length1068 bp 
Protein Length355 aa 
Translation table11 
GC content56% 
IMG OID640163496 
Productquinolinate synthetase 
Protein accessionYP_001094053 
Protein GI127512856 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0379] Quinolinate synthase 
TIGRFAM ID[TIGR00550] quinolinate synthetase complex, A subunit 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0143239 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCAAG TAGCACCAAG CATCGAAAAT ATTCAGTATC CGTTTCCAGC AAAGCCCATT 
CCCCTAAGCG ATAGCGAGAA GCATGCCTAC AAGGCGCGCA TCAAGCAGCT GTTGAAGGAG
AAAGAGGCTG TCTTGGTAGC CCACTACTAT ACCGACCCTG AGATCCAGGC GCTGGCGGAA
GAGACCGGCG GCTGTGTGTC GGACTCTCTA GAGATGGCCC GCTTCGGTCG TGACCATCCA
GCCAAGACGC TGATCGTGGC CGGGGTTAAG TTTATGGGCG AGACTTCTAA GATCTTAAGC
CCGGAAAAGA CTGTGCTTAT GCCAACCTTG GATGCCACCT GCTCACTGGA CGTAGGCTGT
CCTATCGACA CCTTTAGCGC CTTCTGTGAT GCCCATCCAG ACCATACCGT CGTGGTATAT
GCCAACACCT CGGCCGCCGT TAAGGCGCGG GCCGACTGGG TAGTGACCTC GAGTATCGCC
CTTGAGATCG TCGAGCATCT CGATAGCCAA GGTAAGAAGA TCATCTGGGG ACCTGACCGT
CACCTGGGAA GCTATATCGC CAAGCAGACT GGCGCCGACA TGCTGATGTG GCAGGGCGAG
TGTATCGTGC ACGATGAGTT CAAGGCCAAG GCGCTGCGTC AGTTAAAAGA GCAGTATCCT
AATGCGGCTG TGTTGGTGCA CCCCGAATCA CCGGCGAGCG TGGTTGAGAT GGCCGATGCC
GTTGGCTCCA CCAGTCAGCT GATCAAGGCG GCGCAGAGCC TGGAGAACGA CATCTTTATT
GTGGCTACCG ATAAGGGGAT CTTCTACAAG ATGCAACAGG CGGCGCCGAA CAAGACCCTG
ATCGAGGCGC CCACCGGCGG TAACGGCGCG ACCTGTCGTA GCTGTGCCCA CTGTCCTTGG
ATGGCGATGA ACGGCCTTAA GGCAATCGAG GCGGCATTGA TTAACGATGG TTCGGAGCAA
CACGAGATCT TCGTCGATGA GTCGCTTAGA GAGCGTGCAC TGTTGCCGCT CGATCGTATG
CTAGATTTTG CCAAGACGCT GAACATGCAG GTTAAAGGTA ACGCCTAG
 
Protein sequence
MSQVAPSIEN IQYPFPAKPI PLSDSEKHAY KARIKQLLKE KEAVLVAHYY TDPEIQALAE 
ETGGCVSDSL EMARFGRDHP AKTLIVAGVK FMGETSKILS PEKTVLMPTL DATCSLDVGC
PIDTFSAFCD AHPDHTVVVY ANTSAAVKAR ADWVVTSSIA LEIVEHLDSQ GKKIIWGPDR
HLGSYIAKQT GADMLMWQGE CIVHDEFKAK ALRQLKEQYP NAAVLVHPES PASVVEMADA
VGSTSQLIKA AQSLENDIFI VATDKGIFYK MQQAAPNKTL IEAPTGGNGA TCRSCAHCPW
MAMNGLKAIE AALINDGSEQ HEIFVDESLR ERALLPLDRM LDFAKTLNMQ VKGNA