| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1926 |
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| Symbol | |
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| ID | 4921254 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2223713 |
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| End bp | 2224690 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163494 |
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| Product | transketolase, central region |
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| Protein accession | YP_001094051 |
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| Protein GI | 127512854 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00106606 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGGCAAAGA TTAATATGTT ACAAGCCATC AACGATGCCT TGACCATTGC GATGGAAACC
GACGACAAGG CGGTGATCTT CGGTGAAGAC GTTGGCCATT TTGGCGGCGT GTTCCGCGCC
ACCTCTGGCC TGCAGGATAA GTTTGGTCGC GATCGTTGTT TTAACACCCC GCTGACAGAG
CAGGGTATCG CTGGTTTTGC CAACGGTCTG GCATCTAATG GCATGACGGC CATTGCCGAG
ATCCAGTTTG CCGACTATAT CTTCCCGGCG TTCGATCAGA TAGTAAACGA GTCTGCCAAG
TTCAGATACC GTAGCGGTAA CGAGTTTAAT GTGGGTGGTA TCACCTACCG TACCCCTTAT
GGTGGCGGCA TCGCCGGTGG TCACTACCAC TCGCAATCGC CAGAAGCGTA TTTCACTCAG
ACACCGGGCT TAAAGGTGGT CGTGCCCCGT AACGCCTATC AGGCTAAGGG CCTGCTGCTT
GCCTCGATTC GTGACAAGAA CCCTGTGGTC TTCTTCGAGC CTAAGCGTCT CTACCGCGCC
AGCGTGGGCG AGGTGCCGGA TGAAGCCTAT GAGATTGAAC TAGGCAAGGC CGAAGTGGTT
CAGGAAGGTA CAGACATTAC CGTGTTGGCC TGGGGCGCTC AGATGGAGAT CGTCGAAGAG
GCGGCTAAGA TGGCGGCCAA GAAGGGGATC TCTTGTGAGG TTATCGACCT GCGCACACTC
GCGCCTTGGG ATGTCGATAC CGTTGCGGCC TCGGTGAAGA AGACCGGACG CTTGGTGATC
AACCATGAAG CGCCGCTGAC CGGTGGCTTT GCCGGCGAGA TCGCCGCGAC TATCCAGCAG
GAGTGTTTCC TCTATCTGGA ATCGCCAATT AGCCGCGTAT GTGGTCTGGA TACCCCATAT
CCGCTGATCC ATGAGAAAGA ATATATGCCT GATGCGCTCA AGACCTTTGA AGCGATCAAA
GCATCGATGA AATACTAG
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| Protein sequence | MAKINMLQAI NDALTIAMET DDKAVIFGED VGHFGGVFRA TSGLQDKFGR DRCFNTPLTE
QGIAGFANGL ASNGMTAIAE IQFADYIFPA FDQIVNESAK FRYRSGNEFN VGGITYRTPY
GGGIAGGHYH SQSPEAYFTQ TPGLKVVVPR NAYQAKGLLL ASIRDKNPVV FFEPKRLYRA
SVGEVPDEAY EIELGKAEVV QEGTDITVLA WGAQMEIVEE AAKMAAKKGI SCEVIDLRTL
APWDVDTVAA SVKKTGRLVI NHEAPLTGGF AGEIAATIQQ ECFLYLESPI SRVCGLDTPY
PLIHEKEYMP DALKTFEAIK ASMKY
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