| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1922 |
|---|
| Symbol | |
|---|
| ID | 4921250 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2218643 |
|---|
| End bp | 2220322 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640163490 |
|---|
| Product | phosphoglucomutase |
|---|
| Protein accession | YP_001094047 |
|---|
| Protein GI | 127512850 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0033] Phosphoglucomutase |
|---|
| TIGRFAM ID | [TIGR01132] phosphoglucomutase, alpha-D-glucose phosphate-specific |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.0000385897 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGGCGCTAC ACGAGCGAGC CGGTAAACCG GCACAACAAA GGGACTTGGT TAATATTCCT
AAACTGATGA GCCACTACTA TCGGCTCTCA CCGGATGTGA CCAATGATGC GCAGAAGGTC
ACGTTCGGCA CCTCGGGCCA CAGAGGCTGT GCCTTTAATA AGAGTTTCAA CGAAAAACAT
ATCCTGGCGA TTGTTCAGGC TGTGGTGGAT CACCGCATCG AGGCGGGTAT CAAGGGGCCG
ATGATCGTCG GTATCGACAC CCATGCACTG TCTCAGGCGG CTTATGTCAC CGCTCTCGAG
GTACTGACCG CCAATGGCGT GCAGGTGATT GTCGCCAAGA ACGATGAGTA TACCCCGACC
CCTGTGGTGT CCCATGCCAT CATAGCGGCC AACAGAGTGC AGGGGGCTGG GCTTACCTAT
GGGCTTAACT ATGGGCTTAC CGATGGCCTT ATCATCACGC CATCTCACAA TCCGCCTCAA
GATGGTGGCA TCAAATATAA TCCCCCCCAT GGTGGTCCGG CCGAAGGCGG CATCACGGCC
TGGGTCGAGC AGCGCGCCAA CGAGTATCTG GCCAAGCAGC TAGAAGGGGT GAAGCGCCTG
ACCTATTCAG TAGCGGTCAC CACCAGTCTT ATTCAAGAGC GCGACCTGAT GGCGGCTTAT
GTCGAAGATC TCGAGCAGGT GATCGACATG CAGGCCATCA AGCAGGCTGG CATTCGTATC
GGTGTCGATC CCCTCGGCGG CTCAGGAATT CACTATTGGG CCAAGATTGC AGAGCGCTAT
GGGCTGGATA TTACCCTGGT GAACGATCGC ATCGATCCCG CCTTTGGTTT TATGCCCCTG
GATAAGGATG GCAAGATCCG TATGGACTGC TCATCGCCCT ATGCCATGGC GGGTCTGCTG
GTCCACCAGG ATGCCTTCGA TATCTGTTTC GGTAACGATC CCGATTACGA TAGGCACGGT
ATTGTGTGCC CGGGCAGCGG TCTGATGAAT CCTAACCATT ATCTGGCGGT GGCTATCGAG
TACCTCTTGT CCCATCGCCC GCAGTGGTCG GCCGATCTTA AGATAGGTAA GACCCTGGTC
TCCAGCGCAA TGATAGACAA GGTGTGCCGT GAGCAGTCGC GCAGCCTCTG TGAGGTGCCG
GTTGGCTTTA AATGGTTCGT CGAGGGCCTG GCCGATGCCA GCTTCGCCTT CGGAGGTGAA
GAGAGTGCCG GCGCCGCCTT CTTACGTCGT GACGGCGGCA GTTGGTGTAC CGATAAAGAT
GGTTTCATCC TTGCGCTGCT GGCGGCAGAG ATTCTGGCGG TAACGGGTAA GACGCCTGCT
AAGCTTTACG CCGAGATGGT CGAGCGTCAC GGAGAGAGCT TCTACAAGCG TATCGACTCG
CCGGTTAACC CTAAGCGTAA GGCTAAGTTT AATCAGTTGG TGAGCGAGCC CCTGAATGTC
AGCGATCTTG GCTGTGAAGC CATGGCTGGA GATGCCATCC TCGAGGTGCT GACTCATGCC
CCGGGCAATG GCGCGGCTAT CGGTGGCATC AAGGTAGTGA CCGAAAAAGC CTGGTTCGCC
GCGCGCCCAT CAGGCACAGA GGCGTTGTTT AAGCTCTATG GCGAAAGTTT TGTCAGCGAG
GCGCATCTCG AGCAGGTGCT GGAGCAGGCC CAGCAGATGA TAGAGCGGCT CTTGGCCTAA
|
|---|
| Protein sequence | MALHERAGKP AQQRDLVNIP KLMSHYYRLS PDVTNDAQKV TFGTSGHRGC AFNKSFNEKH
ILAIVQAVVD HRIEAGIKGP MIVGIDTHAL SQAAYVTALE VLTANGVQVI VAKNDEYTPT
PVVSHAIIAA NRVQGAGLTY GLNYGLTDGL IITPSHNPPQ DGGIKYNPPH GGPAEGGITA
WVEQRANEYL AKQLEGVKRL TYSVAVTTSL IQERDLMAAY VEDLEQVIDM QAIKQAGIRI
GVDPLGGSGI HYWAKIAERY GLDITLVNDR IDPAFGFMPL DKDGKIRMDC SSPYAMAGLL
VHQDAFDICF GNDPDYDRHG IVCPGSGLMN PNHYLAVAIE YLLSHRPQWS ADLKIGKTLV
SSAMIDKVCR EQSRSLCEVP VGFKWFVEGL ADASFAFGGE ESAGAAFLRR DGGSWCTDKD
GFILALLAAE ILAVTGKTPA KLYAEMVERH GESFYKRIDS PVNPKRKAKF NQLVSEPLNV
SDLGCEAMAG DAILEVLTHA PGNGAAIGGI KVVTEKAWFA ARPSGTEALF KLYGESFVSE
AHLEQVLEQA QQMIERLLA
|
|---|
| |