| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1902 |
|---|
| Symbol | |
|---|
| ID | 4921782 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2197099 |
|---|
| End bp | 2197668 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640163470 |
|---|
| Product | NUDIX hydrolase |
|---|
| Protein accession | YP_001094027 |
|---|
| Protein GI | 127512830 |
|---|
| COG category | [L] Replication, recombination and repair
[R] General function prediction only |
|---|
| COG ID | [COG0494] NTP pyrophosphohydrolases including oxidative damage repair enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0854349 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00409955 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACACTGG ACGAGTTTAA ACGGCGCTAC GCTCTGCACC AACTGCCCAC AGACACAGGG
CCGCAGATCC ATCGCACATT GCGACAGGCC GCCGTGCTCG TTCCCCTGAT GGAAGCCAGT
GGCGAGCTGG AGCTGCTGCT GACTCGCCGG CCCACCCACC TAAGGGCCCA TCCGGGGCAG
ATAAGCTTTC CAGGCGGCAA GGTCGAAGAG AGTGATGCCA GTTACGCCGA CACCGCCCTA
CGTGAGGCGT TTGAGGAGAT CGCACTACCG CGGGACAATG TCGAGGTGCT GGGCCAATAC
CCCATGTTTA ACACCTTCAC CGGCTTTGCC ATCGCGCCCA TCATAGGTGT GGTAAGAGAA
GCTTTTGAGC CTGTGCTCGA TCCCGGCGAG GTAGATGAGC TGTTCAGCGT GCCCCTGAGT
TTCCTGTTAA ATCCTGCCAA TCGCATTCAG AAGCAGTTTT CCCGCCGCGG CGTGAACTAC
CCCGTCTACT TCATTCCCTA TGGCGATTAT TTTATCTGGG GCGCCACCGC CGCCATGATA
GACAGGCTCT GTCGCCAGAT AGGCAATTGA
|
|---|
| Protein sequence | MTLDEFKRRY ALHQLPTDTG PQIHRTLRQA AVLVPLMEAS GELELLLTRR PTHLRAHPGQ
ISFPGGKVEE SDASYADTAL REAFEEIALP RDNVEVLGQY PMFNTFTGFA IAPIIGVVRE
AFEPVLDPGE VDELFSVPLS FLLNPANRIQ KQFSRRGVNY PVYFIPYGDY FIWGATAAMI
DRLCRQIGN
|
|---|
| |