Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_1898 |
Symbol | |
ID | 4921778 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2192157 |
End bp | 2193149 |
Gene Length | 993 bp |
Protein Length | 330 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640163466 |
Product | ApbE family lipoprotein |
Protein accession | YP_001094023 |
Protein GI | 127512826 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0683316 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTCGCCGC TTGCTGATCT AGACGATCAA CAGGCGGTTA TCTCGGATGA AAGCGAATAT CCGTTCGTCG ATAGCCAATA TGGACGCAAA AACCTTAAGG GACTGAGGGG CGAGTTCATG GCCATGGCCA GTCGCTGTGA GTTGCTGGCG CGCCCTAAGC AAGCAGGTAG CAAGGCTCAA GATGACAAGA TTGACCAAGA GCGAATAACT CAGGCCTTCA GTCGCGCCAT GGCCGAGGTT AAGTGCATCG AGGCTAAGTA CAGCCGCTTT AGCGAGAACA GCGTATTAAC TCAAATCAAT CGCGGCGCCG GAGACTGGCA AGCGATCGAC GATGAAACCC TTGGTCTACT CAAGTTTGCC GAGCATTGTT ACCGACTTAG CCAAGGCCGT TTTGATGTGA CCGCAGAGCC CGTATTGGCC CTCTGGCCAT TCGGCGCTGG AGAGAGTGCA GCCCCGCCGA GTGATAGCAA GATAGAGGCA GCGCTTGCTC AGGTAGGCTT CGAGCGGCTG ATTATCGAAG ATAACCACTT TTTTCTACCT TATGGCATGG GGATCGATCT TGGTGGGATC GCCAAAGAGT ACGCCGCCGA CAGGGCTGTA GAGGTTCTGC GTCGTGAGCT GCCCGAATAT GATCTCTTAG TGAATCTTGG CGGCGATATG ATTGCCTCTC CAGGCTGCGA GAGGCCCTGG CAGATAGGGA TAGAAGATCC CCACAAGCTA GATACCCCCG CACGTGTGGT GACGCTGAAA TCTGGCGCGC TGGCCACCAG CGGACACTCC CGGCGTTATC TGCTGCACCA AGGAAAGCGC TATGGCCACA TCATCGACCC CAGCACTGGG TACCCCATCA AAGGCGCGCC AATATCGGTC AGTGTGTTTG CGCCTTCTTG TGTCGTCGCC GGCATGCTGG CGACTCTGGC CATGTTACAG GGGGAGGGAG CCGAAGACTT TCTATCTCGT CAGGGCGTCG TTCATCACAT CATCCGTGGC TAG
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Protein sequence | MSPLADLDDQ QAVISDESEY PFVDSQYGRK NLKGLRGEFM AMASRCELLA RPKQAGSKAQ DDKIDQERIT QAFSRAMAEV KCIEAKYSRF SENSVLTQIN RGAGDWQAID DETLGLLKFA EHCYRLSQGR FDVTAEPVLA LWPFGAGESA APPSDSKIEA ALAQVGFERL IIEDNHFFLP YGMGIDLGGI AKEYAADRAV EVLRRELPEY DLLVNLGGDM IASPGCERPW QIGIEDPHKL DTPARVVTLK SGALATSGHS RRYLLHQGKR YGHIIDPSTG YPIKGAPISV SVFAPSCVVA GMLATLAMLQ GEGAEDFLSR QGVVHHIIRG
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