Gene Shew_1898 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_1898 
Symbol 
ID4921778 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2192157 
End bp2193149 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content56% 
IMG OID640163466 
ProductApbE family lipoprotein 
Protein accessionYP_001094023 
Protein GI127512826 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0683316 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTCGCCGC TTGCTGATCT AGACGATCAA CAGGCGGTTA TCTCGGATGA AAGCGAATAT 
CCGTTCGTCG ATAGCCAATA TGGACGCAAA AACCTTAAGG GACTGAGGGG CGAGTTCATG
GCCATGGCCA GTCGCTGTGA GTTGCTGGCG CGCCCTAAGC AAGCAGGTAG CAAGGCTCAA
GATGACAAGA TTGACCAAGA GCGAATAACT CAGGCCTTCA GTCGCGCCAT GGCCGAGGTT
AAGTGCATCG AGGCTAAGTA CAGCCGCTTT AGCGAGAACA GCGTATTAAC TCAAATCAAT
CGCGGCGCCG GAGACTGGCA AGCGATCGAC GATGAAACCC TTGGTCTACT CAAGTTTGCC
GAGCATTGTT ACCGACTTAG CCAAGGCCGT TTTGATGTGA CCGCAGAGCC CGTATTGGCC
CTCTGGCCAT TCGGCGCTGG AGAGAGTGCA GCCCCGCCGA GTGATAGCAA GATAGAGGCA
GCGCTTGCTC AGGTAGGCTT CGAGCGGCTG ATTATCGAAG ATAACCACTT TTTTCTACCT
TATGGCATGG GGATCGATCT TGGTGGGATC GCCAAAGAGT ACGCCGCCGA CAGGGCTGTA
GAGGTTCTGC GTCGTGAGCT GCCCGAATAT GATCTCTTAG TGAATCTTGG CGGCGATATG
ATTGCCTCTC CAGGCTGCGA GAGGCCCTGG CAGATAGGGA TAGAAGATCC CCACAAGCTA
GATACCCCCG CACGTGTGGT GACGCTGAAA TCTGGCGCGC TGGCCACCAG CGGACACTCC
CGGCGTTATC TGCTGCACCA AGGAAAGCGC TATGGCCACA TCATCGACCC CAGCACTGGG
TACCCCATCA AAGGCGCGCC AATATCGGTC AGTGTGTTTG CGCCTTCTTG TGTCGTCGCC
GGCATGCTGG CGACTCTGGC CATGTTACAG GGGGAGGGAG CCGAAGACTT TCTATCTCGT
CAGGGCGTCG TTCATCACAT CATCCGTGGC TAG
 
Protein sequence
MSPLADLDDQ QAVISDESEY PFVDSQYGRK NLKGLRGEFM AMASRCELLA RPKQAGSKAQ 
DDKIDQERIT QAFSRAMAEV KCIEAKYSRF SENSVLTQIN RGAGDWQAID DETLGLLKFA
EHCYRLSQGR FDVTAEPVLA LWPFGAGESA APPSDSKIEA ALAQVGFERL IIEDNHFFLP
YGMGIDLGGI AKEYAADRAV EVLRRELPEY DLLVNLGGDM IASPGCERPW QIGIEDPHKL
DTPARVVTLK SGALATSGHS RRYLLHQGKR YGHIIDPSTG YPIKGAPISV SVFAPSCVVA
GMLATLAMLQ GEGAEDFLSR QGVVHHIIRG