| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1892 |
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| Symbol | |
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| ID | 4921772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2183542 |
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| End bp | 2187027 |
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| Gene Length | 3486 bp |
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| Protein Length | 1161 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640163460 |
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| Product | SNF2-related protein |
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| Protein accession | YP_001094017 |
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| Protein GI | 127512820 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.500803 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTATTAC AAACGGCTGT ACAAGAGTTT TCACATCAAG AAAGGTTTTC CGCGCTGCAA
GCGTTATTGG GCGATCGGCT GCTGGAGTGT CAGCGCCAGG CCCATATCAT CCGCGGCATC
TTTGCCGGTG AGCCTAAAAT AACCTGCCAG GTCTCACTCA ACGATCAGGG TAAGATAAGC
GGTCGCTGCG ACTGTGGTCA GCCTCGTTGT GCCCATCAGG CAGCCTTGGT CATTGAGCAG
GCGGCGCGTC GCGCCCTCGA TGAGCAAGGG CGCTCCAGAC GTTCAGATAC GGCCATTCGC
CTGTTTAGAA GCGATCTCAA GGAACGTTTC GATCCTTTCC CGACCATGGC GCGCCATCGC
ATCCTCTATC TGTTAGTGCC GAGCGAGACA GGTTTGCAGC TCAAGGTATT AAAAGGCTAT
CTGAATAAGA ATGGCCGCTA CCAGCTCAAG GGCCCACTTG GATTCGAACT GCTGCAGAGC
CAGCCTGTGC CCAAGTATGT CAGTCAGACA GATCTCAAGT TGCTGCACAC GCTCAGGGCG
TTTGCCGCTG ACTTTAGCAG TCAAAATATC GATGAAATCA GCAGTGCTCT TGGCAGTAGC
ACTGAAGACA GTAGTCGCGT TAGCAAAAGC AGCAGTAACT TCAACGCCGA AAGCGGCAGT
GAAAAGACAG GCCAGGCCCA TCTACCCGAT TATTTAACCT CTGTGGCTTC GAGCCTGGAG
GCTCAAACGG CGCAGCAAGA TCTGTCACCG GCCGAAACAT CGAGTGAGCA GGCGATCATT
ATCGATCTCG ATTGCGCCTT TGCGGAAACC AATAGCGAGA CAGATAACAG CAATGATAGT
TCGGCGCAGC TTGGCGGCGA TTTTTATCGT CTGCTGTTTG CCAGCGGTCG CTGTTTCTTT
GGCAAGGTGG CCGGCGAGCC GGTGCGTTTG GCAACCCACT ATGATGAAGA CTACCTAGAT
GAAAGCTTCA TGCTGCCCCT TTGCCCCGGT GTCTGGCTGG ATACCTGCTC GGGTACAGGG
ATCATCGATA AACGCCGTGA CGTGCGGGTG AATCAAACCC TGTTAGAAGG CGTGGATCTC
GACGGCGACT GGTTGCCAAG GCTAGAGATC GCCCGCGAGA GCCTAGATCA AAGCTGGCTT
GAACCCCTGC TGGCGCCAAT CGACGTGGCC AAATTTTCCA TGGTTCACCG CGGCCAGCGT
TATGATTTTG AATCGCTCAG TTATCTTGGT GCGGGCCATA AGGCATTTAT GGCGCAATTT
GCCAAGTGCC AGCTGCTGCT TAATCCCTTG CCGCTACTCA CTAGTCAATT CGAGCCAGCC
GTGACTGAAT CACTCGGCGA GGGCCTGCGT CTGGTACCGG GGGAGGCGAG CGAGCATGTG
GTGTTGCTGC GCACGCTTTC CCTTAAGGGC TGGCAGATTG AACTGGTGGC CAAGCAACGT
TTCGTTCAAG TCGCGGCCAA TGCCTGGTAT GGCGAGGTGA ACAGCGCCGA CAAGGATTGG
TTCGAGCTCA GCCTTGGGGT CGAGGTGGAA GGAAAGCGGG TTAACCTCCT GCCATTGCTG
GTCAACCTCA TTCGTCAGGG CAAGCTTAGC CGGGATTTCA ATCAGGCAAC GAGCGGCGAA
CAATCTGGCG CAAACGGTAG TGCGGATCAG CCGCAGGAGG TGGCGCTGGA GCTGGAATCT
GGCGCCATCC TAACGCTGCC GGCGGCGCGT ATTCAGCGCA TACTTGCGGT GCTCGACGAA
CTCTTTACGC AGCAGCCGCT AAACGATCAG GAAAAGCTGG TGCTGGCCCG CCATCACCTC
GGGCGCATTC CGCTGCTCGA TGATGCCTTA AGTCAATCTG AGCAGGCGCT GACCTGGTCG
GGTGAAGCCA AGCTGAGGCA ACACGCAAAG GCGCTCGGGC GTTATCTCAA TGAGCAGCAG
AGCAGGCGAG CAGATAGGCT GGGCACCATA GACTTTGTTA CCCCAGATGG GCTCAACGCC
GAGCTGCGCC CTTATCAGGT AGAGGGGGTT GCCTGGCTAC AATTTATCAA GCGACACGGC
TTCGGCGCCA TACTGGCCGA TGATATGGGG CTGGGTAAGA CGCTGCAGAC CCTGTGTAGT
ATCTTGCTGG ATAAACAGGC TGGGGTGACT AAGGCGCCCG TGTTGGTGAT CGCCCCAACC
AGTTTGCTCA GCAACTGGCA GCGGGAGATC GCCCAGTTTA CGCCTAGCCT GACTAGTTTC
GTCTGGAGCG GCCGCGCCCG CCATGATAAC GAGCAGGCGC TGACGGATGT CGATGTGCTG
ATCACCAGCT ATGGGATCCT GGCCCAAGAC GCCGAGCGGC TGACCAAGCT CAATTGGCAT
CAGGTGATCT TGGATGAGGC CCAGACCATC AAGAACAGTC GCAGCCGTAT CACTAAGTTG
GTGAACCGGC TGCAGACCCA GCATCGTCTC TGTCTAACGG GTACGCCGAT GGAGAACCAT
CTTGGAGAGC TCTGGTCGCT GTTTCATTTC CTGATGCCGG GCTTTCTCGG CACGGCCACT
CAGTTTCAAC GTCAGTTTAA ACAGCCGATA GAGAAAGATC ATTGCGATGC CAGTCGTCAG
CGGCTGGCTC AGCGCCTGGC CCCTTTCATG CTAAGGCGCA CCAAGAGTCA GGTGGCGACC
GAGCTGCCGA CCAAGACGGT GATCAATACC CTGATTGAGC TCAGCCAGAG CCAGTCGGAT
CTCTACGAGA CCATACGTCT CACCGTGGCG GAGCAGGTGC AGTTGGCCCT GAGGCAAACC
GGCGCCAAGG CCAACCGCTT GATGATCAGC AATGCGCTGC TTAAGCTGCG TCAGGTGTGT
TGTCATCCGG CAATGTTAAA CCTAGGCCAG TTGGGGCAGG TTGGTGAGAC AGAGAATTCA
AAAGTGGCGA TATCCCCCGA GGTTAACTTG AGTCAAAGCG TGACGGGCTT AGATGGCGCA
CAGGATGAGC TTAACGCCGA GTCCTCCAAG CTTGCCTGGC TGGAGAACAA GTTGCCGAGC
ATGATAGAAG ATGGTCGCAA CATACTGATC TTCTCATCAT TTACTAGCAT GCTGGATTTG
ATCGCCGAGC AGCTGGAACG CCAGCAGATA GGCTATGAGA TGCTAACCGG GCGCAGTCGC
CATAGGGATC GCATCATAGA GCGTTTCCGT CGCGGCGAGG TAAATGTGTT CCTCATTAGC
CTCAAGGCTG GCGGCTCTGG ACTAAACCTG ACTGAGGCTG ATGTGGTGAT CCATGTGGAT
CCCTGGTGGA ATCCTGCCGC CGAAGAGCAG GCCAGTGACA GGGCCTATCG TATCGGCCAG
GATAAGCCTG TATTTGTCTA TAAGCTTATC TGTCAGAACA CAGTCGAGGA GCGGATTCAG
CAGCTGCAGC AGAGTAAGCA GGCGCTGGCC CAAAGCATGT ATCAGACCGA GAGCCTCACG
GCAGCTGAGA TGGACAGAGA TGATTGGCTG GCTCTCTTAC AGCCCATTAC TGAGCAGCTA
ATCTAA
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| Protein sequence | MLLQTAVQEF SHQERFSALQ ALLGDRLLEC QRQAHIIRGI FAGEPKITCQ VSLNDQGKIS
GRCDCGQPRC AHQAALVIEQ AARRALDEQG RSRRSDTAIR LFRSDLKERF DPFPTMARHR
ILYLLVPSET GLQLKVLKGY LNKNGRYQLK GPLGFELLQS QPVPKYVSQT DLKLLHTLRA
FAADFSSQNI DEISSALGSS TEDSSRVSKS SSNFNAESGS EKTGQAHLPD YLTSVASSLE
AQTAQQDLSP AETSSEQAII IDLDCAFAET NSETDNSNDS SAQLGGDFYR LLFASGRCFF
GKVAGEPVRL ATHYDEDYLD ESFMLPLCPG VWLDTCSGTG IIDKRRDVRV NQTLLEGVDL
DGDWLPRLEI ARESLDQSWL EPLLAPIDVA KFSMVHRGQR YDFESLSYLG AGHKAFMAQF
AKCQLLLNPL PLLTSQFEPA VTESLGEGLR LVPGEASEHV VLLRTLSLKG WQIELVAKQR
FVQVAANAWY GEVNSADKDW FELSLGVEVE GKRVNLLPLL VNLIRQGKLS RDFNQATSGE
QSGANGSADQ PQEVALELES GAILTLPAAR IQRILAVLDE LFTQQPLNDQ EKLVLARHHL
GRIPLLDDAL SQSEQALTWS GEAKLRQHAK ALGRYLNEQQ SRRADRLGTI DFVTPDGLNA
ELRPYQVEGV AWLQFIKRHG FGAILADDMG LGKTLQTLCS ILLDKQAGVT KAPVLVIAPT
SLLSNWQREI AQFTPSLTSF VWSGRARHDN EQALTDVDVL ITSYGILAQD AERLTKLNWH
QVILDEAQTI KNSRSRITKL VNRLQTQHRL CLTGTPMENH LGELWSLFHF LMPGFLGTAT
QFQRQFKQPI EKDHCDASRQ RLAQRLAPFM LRRTKSQVAT ELPTKTVINT LIELSQSQSD
LYETIRLTVA EQVQLALRQT GAKANRLMIS NALLKLRQVC CHPAMLNLGQ LGQVGETENS
KVAISPEVNL SQSVTGLDGA QDELNAESSK LAWLENKLPS MIEDGRNILI FSSFTSMLDL
IAEQLERQQI GYEMLTGRSR HRDRIIERFR RGEVNVFLIS LKAGGSGLNL TEADVVIHVD
PWWNPAAEEQ ASDRAYRIGQ DKPVFVYKLI CQNTVEERIQ QLQQSKQALA QSMYQTESLT
AAEMDRDDWL ALLQPITEQL I
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