| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1889 |
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| Symbol | |
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| ID | 4921769 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2178964 |
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| End bp | 2180589 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163457 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_001094014 |
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| Protein GI | 127512817 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCAAC TCTCCTGGTG GCGCGGCGCC GTCATCTATC AGATCTATCC TCGCAGCTTA
ATGGATTCCA ATGGCGACGG TGTAGGTGAT CTACAAGGCA TCATAAGTAA ACTCGACTAC
ATTGCGAGTC TGAACGTGGA TGCCATCTGG ATCTCGCCTT TCTTCAAGTC GCCGATGAAA
GACTTCGGTT ACGACATCAG TGACTACCGC GCTATCGATC CTTTGTTTGG CACCATGGCG
GACTTCGACG AGCTGATCGA CAAGGCGCAC GGCCTCGGCA TCAAGGTGAT TATCGATCAG
GTGCTCAGCC ACACCTCAGA TCAACACGCC TGGTTTAGCG AGAGCCGCCA GAGCCGGGAT
AACGCCAAGC AGGACTGGTA TGTGTGGGCC GACCCTAATC CAGATGGCAC CGCGCCCAAC
AACTGGCTGG CTATCTTCGG TGGCTGTGCC TGGGAGTGGG AGCCACGTCG TCAGCAATAT
TATCTGCATA ACTTCCTGAC CAGTCAGCCG GATTTGAACT TCCATAACCC TGACGTGCGC
CAAGCTGTGC TGGATAATGT TAAGTTCTGG CTCGACAAGG GAGTCGATGG TTTCCGCCTC
GATGCGATCA CCTTCTGCTA TCACGACGAG CAGCTCAGAG ACAATCCGCC TAAGCCTGAA
GACAAGCGTC AGGGCAGGGG CTTTAGCGAA GACAACCCTT ACGCCTATCA GTATCACTAC
TATAACAACA CCCGCCCGCA GACTGTTGGT TTCATCGAAG AGCTGCGCGC GCTGATCAAC
CAATATCCTG GCGTCGTCAC CCTAGGGGAA GTCTCTTCGG AAGACTCGCT GGCGACCATG
GCCGAATATA CCCAGGGTGA CGATCGCCTG CATATGGCCT ACAGCTTCGA GCTGCTGACC
GATGACTTTA GCCCGGCCTA TATTCGCCAC ACGGTAGAGG CGCTGGAGCA GAGCATTGGC
GATGGCTGGC CCTGCTGGGC GATAGGCAAC CACGACGTGC AACGGGTCGC GACACGTTGG
GGCAGAGACG CCTTCAATAG CGATATGGCC AAGATGCTCA ACGCTATGCT CTGTTCGCTA
CGGGGCAGTG TCTGTAGCTA CCAAGGTGAG GAGTTGGGTC TTGGCGAGGT AGAGATCGCC
TATGAGCAGC TGCAAGATCC GTTCGGCATC ACCTTCTGGC CTATGTTCAA GGGCCGTGAC
GGTTGTCGCA CGCCTATGCC TTGGCGCCAT GATGCCAACC ATGCAGGCTT CAGTGACAAC
ACGCCTTGGT TGCCGGTACC GGCCGATCAC AAAGCCGTGG CGGTCGATGT GCAGGAGGCC
AACCCTGAGT CGATTCTGAA CCATTACCGT CACATGCTGG CCTGGCGTAA ACTGCACCCG
ATACTCGTCA CAGGTGATAT CAAATTTATT GAATCAACCG ATGCACTTTT GGTGTTTGAG
CGTCGTCTAG GCGAGCAGAC CCTGCTGGTT GCCTTTAACC TGAGTGGTCA GCCGCAGAGC
TTTAGCCTGG CAGGTCTGGG CGACAAAGCG CTGTCGCCAC TGGAAGGCCA TGGTCTGCCT
AAGGCCGAGC TGAAAGGCGA TCTGGTTCAG TTTGACGGTT TCGGTTGTTT CTATTGTTGG
AAGTAA
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| Protein sequence | MNQLSWWRGA VIYQIYPRSL MDSNGDGVGD LQGIISKLDY IASLNVDAIW ISPFFKSPMK
DFGYDISDYR AIDPLFGTMA DFDELIDKAH GLGIKVIIDQ VLSHTSDQHA WFSESRQSRD
NAKQDWYVWA DPNPDGTAPN NWLAIFGGCA WEWEPRRQQY YLHNFLTSQP DLNFHNPDVR
QAVLDNVKFW LDKGVDGFRL DAITFCYHDE QLRDNPPKPE DKRQGRGFSE DNPYAYQYHY
YNNTRPQTVG FIEELRALIN QYPGVVTLGE VSSEDSLATM AEYTQGDDRL HMAYSFELLT
DDFSPAYIRH TVEALEQSIG DGWPCWAIGN HDVQRVATRW GRDAFNSDMA KMLNAMLCSL
RGSVCSYQGE ELGLGEVEIA YEQLQDPFGI TFWPMFKGRD GCRTPMPWRH DANHAGFSDN
TPWLPVPADH KAVAVDVQEA NPESILNHYR HMLAWRKLHP ILVTGDIKFI ESTDALLVFE
RRLGEQTLLV AFNLSGQPQS FSLAGLGDKA LSPLEGHGLP KAELKGDLVQ FDGFGCFYCW
K
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