| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1887 |
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| Symbol | |
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| ID | 4921720 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2173512 |
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| End bp | 2175476 |
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| Gene Length | 1965 bp |
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| Protein Length | 654 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163455 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_001094012 |
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| Protein GI | 127512815 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGACGTA CTAATAACAA GTTGAAACTC ACCCTCATCG CCACCTCGTT ACTTATGCTC
GCCCCTTCCG CCTTTCAGGT GATGGCATCT GTACAACCAG CAAGCAGTTC CATTGTCAGC
GAAAATACTC GCGCCCAGAA ACTGCGTATC GAGCCCCTCA ACTGGTGGAC GGGTATGCAA
CACAGCCAGC TGCAGCTGAT GGTGCACGGC GAAAACATCG CTAAGGCCAA GGTAAGCGTT
AAGGCCGATG GCGTAAGCCT CAAAGGCGTT GAGACCACAG AGAACCCCAA CTATCTGTTT
GTTAACTTAG ATACCCAAGG CGCCAAGGCG CAGACCTTTA AGCTGACATT CGAACAAGCG
GGGCAGCCAC AAATTAGCGT GGCCTACGAG CTGCTCAAGC GCGATAAGGG CAGCGCGGCT
CGCCAGGGTT TTAGCAACAA AGACGTTATC TATCTCATCA CGCCGGATCG TTTCGCTAAC
GGCGACCCCA CTAACGACAA CCAGGCCGAC ATGATAGAGC AAGCCGATCG CAGCAATCCG
GGTGGCCGCC ACGGCGGCGA CATTCAGGGG ATCATCAATA GCCTGGACTA TCTGGCAGAC
CTTGGTGTCA CTCAGCTGTG GATCAACCCG CTTACCGAAA ACAATCAGGC CGAATACTCC
TACCACGGCT ACTCGGTCAC CGACCACTAC CGCATCGACC CAAGATTTGG CAGCAACGAC
GATTACCGCC AACTAGCCAT CAAGGCGAAA GAGAAAGGCA TAGGCATCAT CGCCGATGTG
GTAGTCAACC ATATCGGCTC TAACCACTGG TGGATGGATG ATCTGCCCAG CCAGGATTGG
GTTAATCGTC CTGAGGGCGC ATTAGCTCAA GATTCCTCGG CCATCGATTT CACCACCCAC
AGGCGTACCA CGCTGCAAGA CCCCTACGCG GTTGCCAAAG ACAAGCGCGA CTTTAGCCAC
GGCTGGTTTG TCGAGTCCAT GCCGGACCTT AACCAAGAGC AGCCACAGCT TGCTAACTAC
CTGATCCAAA ACAGCATCTG GTGGGTAGAA TACGCTCATC TGAGCGGCAT ACGCGAAGAC
ACCTACTCCT ACGCCGATAA GGATTTTCTG GTCGATTGGA CCCGCGCCAT CATGGCTGAG
TATCCCAAGT TCAACATCGT CGGCGAAGAG TGGACGGGCA ACCCAATAAC CGTCTCCTAC
TGGCAAAAGG GCAAGATCAA CAAGGATGGC TACCAGTCAG AATTGCCAAG CCTGATGGAC
TTCCCCCTCT ATGAAACCCT TATCAAGGCG CTAAGCGAAG AGGAAGGCTG GAGCGAAGGC
ATGATGCGCC TGTATGAGTT TCTCGCCAAC GACGTGGTCT ATGCCGACCC GACGCAACTT
GTGCTGTTCG AAGGCAACCA CGACACCAAC CGCCTCTACA GCCTGCTGGG TGATAACTTA
GCCCTGACCA AGATGGCACT GGCCTATGTG CTTACCAGTA ACCGCATTCC GCAGATCTTC
TATGGCTCAG AAATTTTGAT GCAAAGCCCG ACCAAAGATC GTAATGATGG TATCACCCGC
TCAGATTTCC CCGGTGGCTG GCAGGGAGAT GCTATCTCAG TTTTTGATAA CAAAGGGCTG
AGTGACGATC AAGCGTCCAT GCTTAACTTC ACCCGCAGCC TGCTTAACTT CCGCAAACAG
GCAGACTTCA TCCACAGCGG CGGCCTGCGC CACTATGTGC CTCAGGATGG CGTATATGTG
CAGATGCGCT GCGCCAAACA AGATTGCAGC GACAAGGCGC GCCTCATGGT GATCTACAAC
AAGTTGGATA AGGCGGTCGA GTTACCTCTC GCTCGCTATC GGGATCTGCT AGGCAGTGCC
CGCGCGGCTC GAGATGTGAT CAGCGGCGAT ACCGTCACAC TGGATAAGAC CCTCTCTATC
AAGGGACAAG GCGTTACCCT GTTAGCCATC GAGGAAGCCA AATAA
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| Protein sequence | MRRTNNKLKL TLIATSLLML APSAFQVMAS VQPASSSIVS ENTRAQKLRI EPLNWWTGMQ
HSQLQLMVHG ENIAKAKVSV KADGVSLKGV ETTENPNYLF VNLDTQGAKA QTFKLTFEQA
GQPQISVAYE LLKRDKGSAA RQGFSNKDVI YLITPDRFAN GDPTNDNQAD MIEQADRSNP
GGRHGGDIQG IINSLDYLAD LGVTQLWINP LTENNQAEYS YHGYSVTDHY RIDPRFGSND
DYRQLAIKAK EKGIGIIADV VVNHIGSNHW WMDDLPSQDW VNRPEGALAQ DSSAIDFTTH
RRTTLQDPYA VAKDKRDFSH GWFVESMPDL NQEQPQLANY LIQNSIWWVE YAHLSGIRED
TYSYADKDFL VDWTRAIMAE YPKFNIVGEE WTGNPITVSY WQKGKINKDG YQSELPSLMD
FPLYETLIKA LSEEEGWSEG MMRLYEFLAN DVVYADPTQL VLFEGNHDTN RLYSLLGDNL
ALTKMALAYV LTSNRIPQIF YGSEILMQSP TKDRNDGITR SDFPGGWQGD AISVFDNKGL
SDDQASMLNF TRSLLNFRKQ ADFIHSGGLR HYVPQDGVYV QMRCAKQDCS DKARLMVIYN
KLDKAVELPL ARYRDLLGSA RAARDVISGD TVTLDKTLSI KGQGVTLLAI EEAK
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