| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1874 |
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| Symbol | |
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| ID | 4924095 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2155574 |
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| End bp | 2157148 |
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| Gene Length | 1575 bp |
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| Protein Length | 524 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640163442 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001093999 |
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| Protein GI | 127512802 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2211] Na+/melibiose symporter and related transporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.322942 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.129685 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAATA AAGAGAAGCA TCGGATGTCA CAAAACACCC TACCCGCCCA AGGCACGACC
ACCGTTAAAC CTGCACTCAG CTTCTGGCAG ATCTTCAACA TGTGTTTCGG CTTCCTGGGG
ATCCAGTTTG GCTTCGCGCT GCAAAATGCC AACGTCAGCC GTATCTTTCA GACACTCGGC
GCAGCAATTG ATGACATCCC TATCCTCTGG ATCGCCGCGC CGCTCACCGG CCTGCTGGTG
CAGCCGATCA TCGGCTATAT GAGTGACAAC ACCTGGGGCC GCCTGGGTCG TCGCCGCCCC
TACTTTCTGA TTGGCGCCAT CTTCACCACA CTCGCCATCT TCATCATGCC CCACTCGCCC
GTGCTCTGGG TCGCTGCTGG CATGCTGTGG ATCATGGACG CCTCCATCAA CATCGCCATG
GAGCCGTTTC GCGCCTTCGT GGGCGACAAC CTGCCCACCA AACAACGCCC TCTAGGCTAT
GCCATGCAGA GTTTCTTCAT CGGCGTTGGC GCAGTGGTCG CCTCTGCCCT CCCTTACCTG
CTGACTAACT ACTTCGATGT GGCTAACACG GCGCCCGAGG GCGAGATCGC CGATTCGGTA
CGCTACGCCT TCTATTTCGG CGGCGCCGTG CTGCTGTTAG CCGTCAGCTG GACAGTGTTT
ACCACCAAAG AGTACTCGCC CGAGGAGTTG GCCCGTTTCG AACAGGAAAA CGGCGAGCAG
GTCACGCTGC ACCACGATCG CAGCTGGCTG GCCTATCAGA AAGGCGCCAT GCTCTGGAGC
CTGGTGGGCG CCATCTTAAC CGCCGTCATC TTCTTGCAGT CTCTTGATAA GCAGCTCTAT
CTGCTGGCCC TTGGGATCTT CGCCTTCGGC CCACTGCAAT GGTTCTGCGC TAACACACTG
AAGCATATCA AAGGCGAAGA GCGCCACCAG CAAGGCATGG TGTTTAGCGT AGTCGATGCC
CTGTTTCATA TGCCAAAGGC GATGCGCCAG CTGGCTGTGG TGCAGTTCTT CTCCTGGTTC
GCCCTCTTCT CTATGTGGAT CTACACCACG GCGGCAGTAA CGGATCATCA CTATGGCACC
CAGGATGTGC TGTCTAAGGC CTATAACGAT GGCGCCGACT GGGTGGGCAT GCTGTTCGCC
TCTTACAACG GTTTTGCCGC GGTGGCCGCC ATCTTCATCC CACTGCTCGC CATGGCGGTT
GGCCTCAAGG TCACTCATCT GATCAACCTC TGCTGTGGCG GCATTGGCTT GATTAGCTTC
TACTTTATAC AAGACCCGAA CCTGTTATGG CTGCCCATGA TAGGTGTAGG TATCGCCTGG
GCGTCTATCC TCTCTATCCC CTATGCCCTG CTGTCCAACG CACTGCCCGC CGCCAAGATG
GGGGTCTACA TGGGGATCTT TAACTTCTTC ATCGTGATCC CTCAGCTGCT GGCCGCCAGC
GTGCTAGGCG TGCTGCTCAA TGCCTTCTTC GATGGCAAGC CGATCTTCGC CCTCATCCTG
GGTGGCAGCT TCATGATCCT GGCTGGAATT AGCGTGCTAT TTGTCAGCAG CGAAGCGAGC
AAAGCCGAGC GCTAA
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| Protein sequence | MNNKEKHRMS QNTLPAQGTT TVKPALSFWQ IFNMCFGFLG IQFGFALQNA NVSRIFQTLG
AAIDDIPILW IAAPLTGLLV QPIIGYMSDN TWGRLGRRRP YFLIGAIFTT LAIFIMPHSP
VLWVAAGMLW IMDASINIAM EPFRAFVGDN LPTKQRPLGY AMQSFFIGVG AVVASALPYL
LTNYFDVANT APEGEIADSV RYAFYFGGAV LLLAVSWTVF TTKEYSPEEL ARFEQENGEQ
VTLHHDRSWL AYQKGAMLWS LVGAILTAVI FLQSLDKQLY LLALGIFAFG PLQWFCANTL
KHIKGEERHQ QGMVFSVVDA LFHMPKAMRQ LAVVQFFSWF ALFSMWIYTT AAVTDHHYGT
QDVLSKAYND GADWVGMLFA SYNGFAAVAA IFIPLLAMAV GLKVTHLINL CCGGIGLISF
YFIQDPNLLW LPMIGVGIAW ASILSIPYAL LSNALPAAKM GVYMGIFNFF IVIPQLLAAS
VLGVLLNAFF DGKPIFALIL GGSFMILAGI SVLFVSSEAS KAER
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