| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_1873 |
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| Symbol | |
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| ID | 4924094 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2152982 |
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| End bp | 2155483 |
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| Gene Length | 2502 bp |
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| Protein Length | 833 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640163441 |
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| Product | glucan 1,4-alpha-glucosidase |
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| Protein accession | YP_001093998 |
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| Protein GI | 127512801 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
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| TIGRFAM ID | [TIGR01535] glucan 1,4-alpha-glucosidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000067547 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.14602 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTCTA AGCCAGTACC TTTTACGCGC ACTCTGATCG CCCTCTCCTT GGGCGCCCTG
CTTAGCGCCT GTGGCGGCGC CAAGAGTGAT ATCGACGCCG CACCTGCACC AAGTGCCAGC
GTATCTGAGA CAATTTCAGT TGCACCGGGC GCGCCCGGCG CTTCCCCTAC CTGGGCCTTT
TCCGGCAAAA CAGGGATTGG CACCTCGTTC GAGCCCTATG TGACCAATGC GCAGGGTGCC
GATCAGTACC TGAGCAGCCA GGCCAATCCC GTTAGTCGGG TATGGTTCTC ACTGGCGCAG
GGGATCCTCA CCGAGACCAT GTATGGGCTT ATCCATAACG CCCAGCTCAA AGAGGCGCAG
TTCATCATCA GCGGCAATGG CTTCGTCGAT ACCGAGAAAC ACAACACGGT CACCAGCATA
GATTACCTGC ATAAGGATGA AGCAGGGCGA CCATTGTCCC TCGCCTACAA GGTGATAAAC
AAAGATATCG AGGGCAAATA TCAGATAGAG AAGCACTTTT TTACCGATCC CGATCGCGAC
AGCCTGGTGA TGCAGGTGTT CTTTACCGCC TTCGAGCCGG GGATCACCCC TTATCTCTAC
GTCAATCCCC ATATCGACAA CAGCGGCGCC AACGATATCG CCAGCGTGAG CCAAGATGGC
AACAGCCTCT TCGCCTACAC GGGCGATAAA GATTCCAGCG TGCTGACCGT GCGCGGTGAC
ATTCCCTTTA CGGCAAGTAG CGTGGGCTTT GTCGGCGAGT CAGATGGTCT CACCGATCTT
AAGGCCAACG GCGAGCTGAA CTGGCGTTAC GCCAGCACCA GCGCTGATAA GCAAAGCCTA
GGTAATGTCG CCATGACGGC GGCGCTGCCT ACTCTGGAGG TGGGCGATGC TAACCGCCCA
AGTCTTCGCA CTACCTTAGT GTTTGGCTTC GGCGCAGATA AGGCCAGCAG CGAGCAAAAT
GCCAAAGACA CCCTTAAAGA TGGTTATAAC AAGGTCCTCG CCGCCTATAA CGGTGAAGGC
GATGCCATCG GCTGGCAGGA CTATCTGCAC TCGCTCTCAA GTCTTAATGC CATGACCGCC
AATACCGCCG ATGAGGGCAA GCTACTCTAT ACCAGCGCCA TGGTGCTCAA GGCCCAGGAA
GATAAGACCC ACGCCGGCGC CCTTATCGCC TCGCTCTCTA ATCCCTGGGG CGACAGCGTC
TCGGCCGTCA CCGGCTCGAC CGGCTACAAG GCCGTCTGGC CGAGGGACTT CTATCAATGC
GCCATGGCGT TTCTGGCCAT GGGCGATACC CAAACCCCTA AGGTGGCCTT CGAGTATCTA
AAGAAGGTTC AGGTTACGGC AGCGACACCC GGCTATAGCG GCGTGCCCGG CTGGTTCCTA
CAGAAGACTC ATGTGGATGG TCAGATAGAA TGGGTCGGCG TGCAGCTGGA TCAGACCGCC
ATGCCTATCA TGCTCGGTTG GAAGCTCTGG CAGGCTGGCG TGCTGAGCGA CAATGAGATC
GCCAGCTGGT ATCAGACCAT GTTGAAGCCG GCGGCCGATT TTCTGATAAG CGGCGGCGAG
GTCAACCTCG ACTGGAACTA CACTCAGATC ACACCCCTTA AGACACAGCA AGAACGTTGG
GAAGAGCAGC AAGGCTACTC ACCTTCTACC GCAGCGGCGG TGATAGCAGG GCTGATCACT
GCCAGCGATA TCGCCAAGCA GGCAGGCGAT TTAAACTCAA GCGAGAAATA TCTCGCCAGT
GCCAAATCAA TGGCCGAAAA GCTCGACTCC TTGGTAGTGA CCCAGCAAGG CCTGCTAAGT
GCAGAGGATG GCACAAAGGC GCCTTACTAT CTGCGCCTTG CGCCCAATGG TACGCCGGAC
AGTGCAGATA AGCTTGCCGA CAACAATGGC CGCGCAGGCT TAGATCAGCG TGAGGTGTTA
GACGGCGGCT TCCTAGAGCT GGTGCGTTAC GGCGTGAAGA GCGCCAACGA CAAGACCATC
AACGACACCC TCAAGCTTAT CGATAACACG GCGCTCGAGG ATAATCTCAG AGTCAGGTAT
GAATTTACCG CCAAAGATGG CAGCACGTTC CCAGGCTTTA GACGCTACGG CAACGACGGC
TATGGCGAAG ACACCGCCAC AGGCGCCAAC TATGCCGAGA GTGGCAGCAA CACTCCTGGG
CAACGCGGCA GAGTCTGGCC GTTCTTCACC GGCGAGCGCG CCCACTTCGA ACTGGCCAAG
GCGATCGCCG ATGGCACGCT CAATGATGCA AGCAAGGCGC AGCTAGTACA GACCTATGTC
AAGGGGATGG AGGCTTTTGC CAATGAGGGA CTGATGCTAC CCGAGCAGGT TTGGGATGGT
GTGGGCGACA AGACCCGCTT TAACTATCAG CTTGGCCAAG GCACTAACTC GGCCACCCCG
CTTGCCTGGA CCCACGCCGA ATATGTGAAG ATGGTGCGCT CTATCACAGA GGCTAAGGTG
TGGGACCACT ACGAGGATGT GGCCAAGGCA CTTAACAACT AG
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| Protein sequence | MTSKPVPFTR TLIALSLGAL LSACGGAKSD IDAAPAPSAS VSETISVAPG APGASPTWAF
SGKTGIGTSF EPYVTNAQGA DQYLSSQANP VSRVWFSLAQ GILTETMYGL IHNAQLKEAQ
FIISGNGFVD TEKHNTVTSI DYLHKDEAGR PLSLAYKVIN KDIEGKYQIE KHFFTDPDRD
SLVMQVFFTA FEPGITPYLY VNPHIDNSGA NDIASVSQDG NSLFAYTGDK DSSVLTVRGD
IPFTASSVGF VGESDGLTDL KANGELNWRY ASTSADKQSL GNVAMTAALP TLEVGDANRP
SLRTTLVFGF GADKASSEQN AKDTLKDGYN KVLAAYNGEG DAIGWQDYLH SLSSLNAMTA
NTADEGKLLY TSAMVLKAQE DKTHAGALIA SLSNPWGDSV SAVTGSTGYK AVWPRDFYQC
AMAFLAMGDT QTPKVAFEYL KKVQVTAATP GYSGVPGWFL QKTHVDGQIE WVGVQLDQTA
MPIMLGWKLW QAGVLSDNEI ASWYQTMLKP AADFLISGGE VNLDWNYTQI TPLKTQQERW
EEQQGYSPST AAAVIAGLIT ASDIAKQAGD LNSSEKYLAS AKSMAEKLDS LVVTQQGLLS
AEDGTKAPYY LRLAPNGTPD SADKLADNNG RAGLDQREVL DGGFLELVRY GVKSANDKTI
NDTLKLIDNT ALEDNLRVRY EFTAKDGSTF PGFRRYGNDG YGEDTATGAN YAESGSNTPG
QRGRVWPFFT GERAHFELAK AIADGTLNDA SKAQLVQTYV KGMEAFANEG LMLPEQVWDG
VGDKTRFNYQ LGQGTNSATP LAWTHAEYVK MVRSITEAKV WDHYEDVAKA LNN
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